Amicus Curiae Brief — County of Maui, Hawaii, Petitioner v. Hawaii Wildlife Fund, et al.

Supreme Court briefJul 19, 2019

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No. 18-260

IN THE

_______________

COUNTY OF MAUI,

Petitioner,

v.

HAWAI‘I WILDLIFE FUND, et al.,

Respondents.

________________

On Writ of Certiorari to the United States

Court of Appeals for the Ninth Circuit

______________________

BRIEF OF AMICI CURIAE FORMER EPA

OFFICIALS IN SUPPORT OF RESPONDENTS

_________________

SHAUN A. GOHO

Counsel of Record

EMMETT ENVIRONMENTAL

LAW & POLICY CLINIC

HARVARD LAW SCHOOL

6 Everett St., Suite 5116

Cambridge, MA 02138

617-496-2058

sgoho@law.harvard.edu

Counsel for Amici Curiae

i

TABLE OF CONTENTS

Page

TABLE OF CONTENTS ............................................. i

TABLE OF AUTHORITIES ...................................... iii

INTEREST OF THE AMICI CURIAE .......................1

SUMMARY OF ARGUMENT .....................................2

ARGUMENT ...............................................................4

I.

Affirming the Decision of the Court of Appeals

Will Maintain the Legal Status Quo ....................4

A. For at Least Three Decades, EPA Interpreted

the CWA to Apply to Point Source Discharges

that Reach Surface Waters via Groundwater

.........................................................................5

B. EPA and State Guidance Documents Instruct

Permit Writers to Address Discharges

through Hydrologically-Connected

Groundwater .................................................11

C. EPA and the States Have Issued Many

NPDES Permits that Address Discharges

that Pass through Groundwater to

Jurisdictional Surface Waters .....................16

II. Regulating Discharges that Pass through

Groundwater is Administratively Feasible .......21

A. It is Feasible to Determine when a Facility

Needs a NPDES Permit for Discharges that

Pass through Groundwater ..........................21

B. NPDES Permitting Requirements for

Discharges that Pass through Groundwater

are not Overly Burdensome .........................24

ii

III. Reversal of the Court of Appeals Would Disrupt

Existing Protections against Significant Harms

that are not Addressed by Other Statutes .........29

CONCLUSION ..........................................................35

iii

TABLE OF AUTHORITIES

Page(s)

Cases

Kentucky Waterways Alliance v. Kentucky Utilities

Company, 905 F.3d 925 (6th Cir. 2018) ................34

POM Wonderful LLC v. Coca-Cola Co., 573 U.S. 102

(2014) ......................................................................30

Washington Wilderness Coalition v. Hecla Mining,

870 F. Supp. 983 (E.D. Wash. 1994) .....................15

Statutes and Regulations

33 U.S.C. § 1311(a) ......................................................4

33 U.S.C. § 1342(a) ......................................................4

33 U.S.C. § 1342(b) ....................................................14

33 U.S.C. § 1362(12)(A) ...............................................4

40 C.F.R. § 261.4(a)(2) .................................................9

Ariz. Admin. Code R18-11-405.B ..............................30

Fla. Admin. Code r. 62-520.-310(2) ...........................30

314 Mass. Code Regs. 5.09(1)....................................30

Federal Register Notices

Amendments to the Water Quality Standards

Regulation That Pertain to Standards on Indian

Reservations, 56 Fed. Reg. 64,876 (Dec. 12, 1991) .7

iv

Disposal of Coal Combustion Residuals From Electric

Utilities, 80 Fed. Reg. 21,302 (Apr. 17, 2015).......34

Final General NPDES Permit for Concentrated

Animal Feeding Operations (CAFO) in Idaho ID-G01-0000, 62 Fed. Reg. 20,177 (Apr. 25, 1997) .........7

Hazardous Waste Identification Rule (HWIR):

Revisions to the Mixture and Derived-From Rules,

66 Fed. Reg. 27,266 (May 16, 2001) ........................7

Interpretive Statement on Application of the Clean

Water Act National Pollutant Discharge

Elimination System Program to Releases of

Pollutants From a Point Source to Groundwater,

84 Fed. Reg. 16,810 (Apr. 23, 2019) ........................7

National Pollutant Discharge Elimination System

General Permit and Reporting Requirements for

Discharges From Concentrated Animal Feeding

Operations,

58 Fed. Reg. 7610 (Feb. 8, 1993) ........... 7, 17, 23, 24

National Pollutant Discharge Elimination System

Permit Application Regulations for Storm Water

Discharges, 55 Fed. Reg. 47,990 (Nov. 16, 1990)....6

National Pollutant Discharge Elimination System

Permit Regulation and Effluent Limitation

Guidelines and Standards for Concentrated

Animal Feeding Operations (CAFOs), 68 Fed. Reg.

7176 (Feb. 12, 2003) .................................................9

National Pollutant Discharge Elimination System

Permit Regulation and Effluent Limitations

v

Guidelines and Standards for Concentrated

Animal Feeding Operations, 66 Fed. Reg. 2960

(proposed Jan. 12, 2001) .............................. 8, 10, 22

Notice of Lodging of Consent Decree Pursuant to the

Clean Water Act; ConAgra, Inc., 63 Fed. Reg.

55,409 (Oct. 15, 1998) ............................................21

Proposed General NPDES Permit for Concentrated

Animal Feeding Operations (CAFO) in Idaho, 60

Fed. Reg. 44,489 (Aug. 28, 1995) .............................7

Reissuance of NPDES General Permits for Storm

Water Discharges From Construction Activities, 63

Fed. Reg. 7858 (Feb. 17, 1998) .......................... 7, 10

Other Authorities

Ariz. Dep’t of Envtl. Quality, Draft Fact Sheet,

Arizona Pollution Discharge Elimination System

(AZPDES) Permit No. AZ0026174

(July 14, 2017), http://static.azdeq.gov/pn/fs_azpde

s_alpine.pdf .......................................... 20, 25, 26, 28

Arizona Dep’t of Mines & Mineral Resources,

Arizona Mining Permitting Guide (2011),

http://repository.azgs.az.gov/sites/default/files/dlio/f

iles/nid1128/arizona_mining_permitting_guide_20

11.pdf ......................................................................15

Authorization to Discharge under the Colorado

Discharge Permit System (Jan. 26, 2012) ............20

In re Bethlehem Steel Corp., 2 E.A.D. 715 (1989) ......6

vi

JoAnn Burkholder et al., Impacts of Waste from

Concentrated Animal Feeding Operations on Water

Quality, 115 Envtl. Health Persp. 308 (2007) ......31

Cal. State Water Resources Control Board, NPDES

General Permit For Storm Water Discharges

Associated With Industrial Activities, Order

NPDES No. CAS000001, Fact Sheet (Apr. 1, 2014),

https://www.waterboards.ca.gov/board_decisions/a

dopted_orders/water_quality/2014/wqo2014_0057_

dwq_rev_mar2015.pdf ..................................... 19, 23

Colo. Dep’t of Public Health & Env’t, Colorado

Discharge Permit System (CDPS) Fact Sheet to

Permit Number COG5000000 (Oct. 13, 2016),

https://www.colorado.gov/pacific/sites/default/files/

WQ_PER_COG500000_FS_1.pdf ..........................19

Colorado Discharge Permit System (CDPS) Fact

Sheet to Permit Number CO0041351, Western

Sugar Cooperative, Fort Morgan Facility (Jan. 26,

2012) ........................................................... 20, 27, 29

Comment of Attorneys General of Maryland,

California, Massachusetts, Oregon, and Vermont

on Clean Water Act Coverage of “Discharges of

Pollutants” via a Direct Hydrologic Connection to

Surface Water (EPA-HQ-OW-2018-0063; FRL9973-41-OW) (May 21, 2018) .................................22

EPA Office of Wastewater Management, EPA-833-B04-001, NPDES Permit Writers’ Guidance Manual

and Example NPDES Permit for Concentrated

Animal Feeding Operations (2003),

vii

https://www3.epa.gov/npdes/pubs/cafo_permit_guid

ance_entirepub.pdf .......................................... 13, 14

EPA Office of Wastewater Management, Water

Permitting 101 (2002), https://www3.epa.gov/npdes

/pubs/101pape.pdf ..................................................12

EPA Office of Water, EPA’s National Hardrock

Mining Framework (1997), https://www.epa.gov/sit

es/production/files/2015-10/documents/hardrock_m

ining_framework_0.pdf ..........................................33

EPA Office of Water, EPA-833-B-93-004, Guidance

Manual for Developing Best Management Practices

(BMP) (1993), https://www3.epa.gov/npdes/pubs/ow

m0274.pdf...............................................................13

EPA Office of Water, EPA-833-B-95-001, Guide

Manual On NPDES Regulations For Concentrated

Animal Feeding Operations (1995),

https://www3.epa.gov/npdes/pubs/owm0266.pdf ..13

EPA Office of Water, EPA-833-F-12-001, NPDES

Permit Writers’ Manual for Concentrated Animal

Feeding Operations (2012),

https://www3.epa.gov/npdes/pubs/cafo_permitman

ual_entire.pdf ............................................. 14, 18, 23

EPA Region 1, Fact Sheet, Forbes Farm Partnership,

Inc., NPDES Permit No. NH0023540 (2018),

https://www.epa.gov/sites/production/files/2018-04/

documents/draftnh0023540permit.pdf .................18

EPA Region 10, Authorization to Discharge Under

the National Pollutant Discharge Elimination

viii

System for Concentrated Animal Feeding

Operations, No. IDG010000 (Mar. 29, 2012),

https://www.epa.gov/sites/production/files/201712/documents/r10-npdes-idaho-cafo-gp-id010000final-permit-2012.pdf ....................................... 17, 23

EPA Region 10, Authorization to Discharge Under

the National Pollutant Discharge Elimination

System, Taholah Village Wastewater Treatment

Plant, No. WA0023434 (June 4,

2015), https://www.epa.gov/sites/production/files/20

17-09/documents/r10-npdes-taholah-wa0023434final-permit-2015.pdf ....................................... 17, 28

EPA Region 5, Authorization to Discharge Under the

National Pollutant Discharge Elimination System,

Neopit Wastewater Treatment Facility, No. WI0073059-2

(Sept. 22, 2016), https://www.epa.gov/sites/producti

on/files/2017-02/documents/wi0073059fnlprmt09_2

2_2016_0.pdf .................................................... 17, 28

EPA Region 6, Authorization to Discharge under the

National Pollutant Discharge Elimination System,

Permit No. NM0022306 (Aug. 29, 2006),

https://semspub.epa.gov/work/06/619835.pdf .......26

EPA Region 6, Authorization to Discharge under the

National Pollutant Discharge Elimination System,

Permit No. NM0022306 (Sept. 30, 2013),

https://www.env.nm.gov/swqb/NPDES/Permits/NM

0022306-Chevron-Questa.pdf ................................26

EPA Region 6, Authorization to Discharge Under the

National Pollutant Discharge Elimination System,

ix

Questa Mine, No. NM0022306 (Sept. 30, 2013),

https://www.env.nm.gov/swqb/NPDES/Permits/NM

0022306-Chevron-Questa.pdf ................................17

EPA Region 6, Fact Sheet, Molycorp, Inc., NPDES

Permit No. NM0022306 (May 16, 2006),

http://clinics.law.harvard.edu/environment/files/20

19/07/Molycorp-Fact-Sheet.pdf ........... 17, 18, 27, 33

EPA Region 6, National Pollutant Discharge

Elimination System (NPDES) General Permit for

Discharges from Concentrated Animal Feeding

Operations (CAFOs) in New Mexico, No.

NMG010000 (July 14, 2016), https://www.env.nm.g

ov/wp-content/uploads/2017/07/NMG010000CAFO-NM-20160901.pdf .......................................17

EPA Region 6, NPDES Permit No. NM0022306 –

Response to Comments (Sept. 30, 2013), https://ww

w.env.nm.gov/swqb/NPDES/Permits/NM0022306Chevron-Questa.pdf ...............................................27

EPA Region 6, Statement of Basis, US Liquids of

Louisiana, Ltd., NPDES Permit No. LA0068420

(May 9, 1997), http://clinics.law.harvard.edu/enviro

nment/files/2019/07/US-Liquids-of-LouisianaStatement-of-Basis.pdf .................................... 18, 25

EPA, EPA-600/R-09/151, Characterization of Coal

Combustion Residues from Electric Utilities –

Leaching and Characterization Data Hazardous

and Solid Waste Management System

(2009), https://nepis.epa.gov/Exe/ZyPDF.cgi/P1007

JBD.PDF?Dockey=P1007JBD.PDF ......................34

x

EPA, EPA-833-B-96-003, U.S. EPA Permit Writers’

Manual (1996),

https://www3.epa.gov/npdes/pubs/owm0243.pdf ..12

EPA, EPA-833-K-10-001, NPDES Permit Writers’

Manual (2010),

https://www3.epa.gov/npdes/pubs/pwm_2010.pdf 12

EPA, National Pollutant Discharge Elimination

System (NPDES) Storm Water Program Questions

and Answers (2004),

https://www3.epa.gov/npdes/pubs/sw_qanda_entire

document.pdf..........................................................13

EPA, Response to Comments – Topic 10: Legal

Analysis (June 30, 2015),

https://www.epa.gov/sites/production/files/201506/documents/cwr_response_to_comments_10_lega

l.pdf.........................................................................11

EPA, Risk Assessment Evaluation for Concentrated

Animal Feeding Operations (2004), https://nepis.ep

a.gov/Exe/ZyPDF.cgi/901V0100.PDF?Dockey=901V

0100.PDF................................................................32

Jennifer S. Harkness et al., Evidence for Coal Ash

Ponds Leaking in the Southeastern United States,

50 Envtl. Sci. & Technology 6583 (2016) ..............34

Letter from Kevin M. Pierard, Chief NPDES

Programs Branch, EPA Region 5, to Ann Foss,

Metallic Mining Sector Director, Minnesota

Pollution Control Agency (Nov. 3, 2016), https://ww

w.eenews.net/assets/2019/01/16/document_daily_0

1.pdf ........................................................................20

xi

Letter from Max H. Dodson, Director, Water

Management Division, EPA Region 8, to Dan

Fraser, Chief, Water Quality Bureau, Montana

Department of Health & Environmental Sciences,

NPDES Permit Issues Hard Rock Mines (Dec. 22, 1

993), http://www.sec.nv.gov/appeal_docs/epa_letter

_cwa_122293.pdf ....................................................33

Lummi Natural Resources Dep’t, Evaluation Report

on the Development and Implementation of a

Lummi Nation NPDES Program (2005),

https://www.lummi-nsn.gov/userfiles/83_NPDES%

20Delegation%20ReportFINAL.pdf ......................16

Memorandum from Michael Shapiro, Director, Office

of Solid Waste & Lisa K. Friedman, Associate

General Counsel, Solid Waste and Emergency

Response Division, EPA, to Waste Management

Division Directors, Interpretation of Industrial

Wastewater Discharge Exclusion From the

Definition of Solid Waste (Feb. 17, 1995), https://w

ww3.epa.gov/npdes/pubs/owm607.pdf. ............. 9, 10

Minn. Pollution Control Agency, National Pollutant

Discharge Elimination System/State Disposal

System (NPDES/SDS) Permit Program Fact Sheet,

Permit No. MN0071013 (Jan. 31, 2018), https://ww

w.pca.state.mn.us/sites/default/files/wq-wwprm151gg.pdf ..................................................................20

Mont. Dep’t of Envtl. Quality, Authorization to

Discharge Under the Montana Pollutant Discharge

Elimination System, Permit No. MT0021849 (Jan.

11, 2014), http://deq.mt.gov/Portals/112/Water/WP

B/MPDES/Majors/MT0021849PER.pdf .... 20, 26, 28

xii

Oklahoma Dep’t of Agric., Food, & Forestry,

Agriculture Pollutant Discharge Elimination

System (AgPDES) General Permit for Discharges

from Concentrated Animal Feeding Operations

(CAFOs) in Oklahoma, AgPDES Permit No.

OKG010000, (Mar. 30, 2017), https://www.oda.stat

e.ok.us/aems/Oklaho-ma%20AgPDES%20CAFO%2

0General%20Permit%20OKG01000%2020172022.pdf ............................................................19, 23

Oregon Dep’t of Envtl. Quality, Disposal of

Municipal Wastewater Treatment Plant Effluent by

Indirect Discharge to Surface Water via

Groundwater or Hyporheic Water, Internal

Management Directive (IMD) (2007),

https://www.oregon.gov/deq/Filtered%20Library/I

MDindirectdischarge.pdf .......................................15

Response to Comments on the Proposed National

Pollutant Discharge Elimination System (NPDES)

General Permit for Discharges from Concentrated

Animal Feeding Operations (CAFOs) in New

Mexico (NMG010000) (2009),

http://clinics.law.harvard.edu/environment/files/20

19/07/NM-CAFO-General-Permit-Response-toComments.pdf ........................................................32

State Program Authority, Tab 2 of NPDES State

Program Information, EPA,

https://www.epa.gov/npdes/npdes-state-programinformation#tab-2 ..................................................14

Tenn. Dep’t of Env’t & Conservation, General State

Operating Permit for Concentrated Animal

Feeding Operations, No. SOPC00000

xiii

(Aug. 1, 2015), https://www.tn.gov/content/dam/tn/

environment/water/documents/permit_water_sopc0

0000_pmt.pdf ................................................... 19, 23

Tex. Comm’n on Envtl. Quality, General Permit to

Discharge Wastes, TPDES General Permit No.

TXG920000 (July 10, 2014), https://www.tceq.texas

.gov/assets/public/permitting/wastewater/general/t

xg920000.pdf .................................................... 19, 23

Tintina Montana, Inc., Integrated Discharge Permit

Application Narrative Black Butte Copper Project

Meagher County, Montana (Dec. 11, 2017),

https://deq.mt.gov/Portals/112/Land/Hardrock/Doc

uments/TintinaMines/R17%20Permit%20Applicati

on%20Narrative.pdf...............................................20

U.S. Fish & Wildlife Service & EPA Region 6,

Environmental Contaminants Associated with a

Swine Concentrated Animal Feeding Operation

and Implications for McMurtrey National Wildlife

Refuge (2004), https://ecos.fws.gov/ServCat/Downlo

adFile/21670?Reference=23151 .............................32

Virginia Dep’t of Envtl. Quality, VPDES Permit

Manual (2014), https://www.deq.virginia.gov/Porta

ls/0/DEQ/Water/PollutionDischargeElimination/VP

DESPermitManual.pdf ..........................................15

Wash. Dep’t of Ecology, Water Quality Program

Permit Writer’s Manual (2018), https://fortress.wa.

gov/ecy/publications/documents/92109.pdf ...........15

1

INTEREST OF THE AMICI CURIAE1

Amici are former officials of the United States

Environmental Protection Agency (EPA). Collectively, they have many decades of experience in the implementation of the Clean Water Act (CWA) and

therefore have an interest in its proper interpretation. They have seen first-hand that EPA has applied the National Pollutant Discharge Elimination

System (NPDES) permitting program to discharges

from point sources that reach surface waters by passing through groundwater for decades. This experience has shown them that such permitting is feasible

and that it is needed to address a variety of environmental and public health risks. They are concerned

that a reversal of the decision of the Court of Appeals

will disrupt the implementation of the CWA and

create a significant regulatory loophole.

Amicus Judith Enck served as Regional Administrator for EPA Region 2 from December 2009 to January 2017.

Amicus J. Charles Fox served as EPA Assistant

Administrator for Water from July 1998 to January

2001; as Senior Advisor to the Administrator for the

Chesapeake Bay from March 2009 until January

2011; and as Associate Administrator from February

1 Pursuant to Supreme Court Rule 37.6, amici curiae state that

no counsel for any party authored this brief either in whole or

in part and that no person or entity, aside from amici and their

counsel, made any monetary contribution to the preparation or

submission of this brief. Pursuant to Rule 37.3(a), amici state

that counsel of record for Petitioners and Respondents have

consented to the filing of this brief.

2

1997 to July 1998. He also served as the Secretary of

the Maryland Department of Natural Resources from

August 2001 to January 2003.

Amicus Susan Hedman served as Regional Administrator for EPA Region 5 and as EPA Great

Lakes National Program Manager from April 2010 to

February 2016. She was previously environmental

counsel and senior assistant attorney general in the

Illinois Attorney General’s office.

Amicus Kenneth Kopocis served as the Deputy

Assistant Administrator in EPA’s Office of Water

from 2014 to 2015. Previously, he spent close to

three decades working on Capitol Hill, holding several senior positions on the staffs of both the Committee on Transportation and Infrastructure of the

House of Representatives and the Committee on

Environment and Public Works of the Senate.

Amicus Dennis McLerran served as the Regional

Administrator for EPA Region 10 from February

2010 to January 2017.

Amicus H. Curtis Spalding served as the Regional Administrator for EPA Region 1 from December

2009 to January 2017.

Amicus Nancy Stoner worked at EPA for many

years, including serving as Acting Assistant Administrator for Water from 2011 to 2014 and previously

as Director of the Office of Policy Analysis in the

Office of Enforcement and Compliance Assurance.

SUMMARY OF ARGUMENT

Affirmance of the Court of Appeals will maintain

the legal status quo that has been in place for dec-

3

ades. For at least thirty years, until a few months

ago, EPA interpreted the CWA to allow the regulation of point source discharges that pass through

hydrologically-connected groundwater to jurisdictional surface waters under the NPDES program. It

has repeatedly expressed this interpretation in regulatory preambles, permit writers’ manuals, and other

guidance documents. It has regulated such discharges in both general and individual NPDES permits. It has brought enforcement actions against

entities that make such discharges without a permit.

Similarly, many states with authorized permitting

programs have expressed this interpretation in their

own permit writers’ manuals and have regulated

discharges that pass through hydrologicallyconnected groundwater in both general and individual permits. In short, the decision of the Court of

Appeals is consistent with decades of practice.

That practice, as embodied in individual and

general NPDES permits issued by both EPA and

state agencies, demonstrates that the permitting of

discharges that pass through groundwater is feasible. These agencies have tools for determining when

discharges necessitating a NPDES permit occur,

establishing discharge limits or other permit requirements, and identifying monitoring locations to

ensure compliance.

Moreover, the requirements

imposed under such permits are not overly burdensome on EPA, states, or regulated parties.

Reversal of the Court of Appeals would invalidate

these permits and leave a serious gap in legal protections for surface waters. Other laws, such as the

Safe Drinking Water Act (SDWA) and state ground-

4

water protection laws, are no substitute for the CWA

because they do not protect against the same harms

or address the same pollutants. Discharges that pass

through groundwater to surface waters from sources

such as concentrated animal feeding operations,

mines, and coal ash impoundments can cause significant harms to public health and the environment. A

decision to reverse the Court of Appeals would eliminate CWA protections against these discharges.

Contrary to the County of Maui’s contention, it is a

reversal of the Ninth Circuit’s judgment that would

have “sweeping and transformative consequences.”

Pet. Br. 52.

ARGUMENT

I.

Affirming the Decision of the Court of Appeals Will Maintain the Legal Status Quo

The plain language of the CWA prohibits “any

addition of any pollutant to navigable waters from

any point source,” except in compliance with a

NPDES permit (or other exceptions not applicable

here). 33 U.S.C. § 1362(12)(A) (emphasis added); see

id. §§ 1311(a), 1342(a). This prohibition on its face

applies to the County’s injection of treated sewage

into the wells of the Lahaina Wastewater Reclamation Facility—given that it is factually undisputed

that the wells are point sources, the treated sewage

contains pollutants, and that those pollutants are

added to the Pacific Ocean, a navigable water.

However, the County and its amici, including

EPA, would have the Court graft novel exceptions

onto the bare statutory text, either requiring that

discharges enter navigable waters directly from a

5

point source or uninterrupted series of point sources,

Pet. Br. 19, or prohibiting the regulation of discharges that pass through groundwater before reaching

navigable waters, U.S. Br. 15.

Lacking a sound basis for their positions in the

statutory text, the County and EPA resort to a variety of other arguments, including statutory purpose,

legislative history, and policy concerns. Chief among

these policy arguments is the assertion that upholding the Ninth Circuit’s decision would “vastly expand

NPDES permitting” by “transform[ing] a long-extant

statute.” Pet. Br. 45, 49. Such fears are groundless,

however. In fact, the opposite would be true. The

Court need not hypothesize about the result of subjecting the discharge of pollutants from point sources

to surface waters via groundwater to regulation

under the NPDES permitting program. Such discharges have already been regulated under that

program for decades.

A. For at Least Three Decades, EPA Interpreted the CWA to Apply to Point

Source Discharges that Reach Surface

Waters via Groundwater

For decades, EPA interpreted the CWA to subject

discharges from point sources that reach waters of

the United States by passing through groundwater

to the NPDES permitting program. For example, in

1989, in ruling on an administrative appeal involving

three underground injection control (UIC) permits

under the SDWA, EPA Administrator Lee Thomas

discussed the interrelationship between the CWA,

SDWA, and the Resource Conservation and Recovery

Act (RCRA). With regard to discharges that pass

6

through groundwater in particular, he observed that

EPA “declines to exercise CWA jurisdiction over

injection wells (except those that inject into groundwater with a physically and temporally direct hydrologic connection to surface water).” In re Bethlehem

Steel Corp., 2 E.A.D. 715, 718 (1989) (emphasis added). In ruling that the well injections at issue in the

case were not “discharges” under the CWA, the Administrator repeatedly emphasized that they were

injections into “isolated groundwaters” and noted

that petitioner did not allege “that its wells inject

waste into groundwater with a direct hydrologic

connection to surface water. Today’s decision should

not be read to suggest that waste disposal into such

groundwater may never be a ‘discharge’ under CWA

§ 402.” Id. at 720 & n.9.

The next year, EPA promulgated a regulation to

implement some of the 1987 amendments to the

CWA respecting industrial stormwater discharges.

In the preamble to the final rule, EPA specified that

“discharges to ground waters are not covered by this

rulemaking (unless there is a hydrological connection

between the ground water and a nearby surface water

body).”2

In the succeeding years, EPA made many similar

statements. For example, in 1991, in the preamble

to an amendment to the water quality regulations for

tribal lands, EPA reiterated that

2 National Pollutant Discharge Elimination System Permit

Application Regulations for Storm Water Discharges, 55 Fed.

Reg. 47,990, 47,997 (Nov. 16, 1990) (emphasis added) (citations

omitted).

7

the Act requires NPDES permits for discharges to groundwater where there is a direct hydrological connection between groundwaters and surface waters. In these situations, the affected groundwaters are not considered ‘waters of the United States’ but discharges to them are regulated because such

discharges are effectively discharges to the

directly connected surface waters.3

Many other statements to the same effect followed in

subsequent years.4

Contrary to EPA’s recent characterization of its

prior statements as “collateral” or not “focused on

and explaining the basis for the position,”5 some of

3 Amendments to the Water Quality Standards Regulation That

Pertain to Standards on Indian Reservations, 56 Fed. Reg.

64,876, 64,892 (Dec. 12, 1991) (emphasis added).

4 See, e.g., National Pollutant Discharge Elimination System

General Permit and Reporting Requirements for Discharges

From Concentrated Animal Feeding Operations, 58 Fed. Reg.

7610 (Feb. 8, 1993); Proposed General NPDES Permit for Concentrated Animal Feeding Operations (CAFO) in Idaho, 60 Fed.

Reg. 44,489, 44,493 (Aug. 28, 1995); Final General NPDES

Permit for Concentrated Animal Feeding Operations (CAFO) in

Idaho ID-G-01-0000, 62 Fed. Reg. 20,177, 20,178 (Apr. 25,

1997); Reissuance of NPDES General Permits for Storm Water

Discharges From Construction Activities, 63 Fed. Reg. 7858,

7878, 7881 (Feb. 17, 1998); Hazardous Waste Identification

Rule (HWIR): Revisions to the Mixture and Derived-From

Rules, 66 Fed. Reg. 27,266, 27,272 n.4 (May 16, 2001).

5 Interpretive Statement on Application of the Clean Water Act

National Pollutant Discharge Elimination System Program to

Releases of Pollutants From a Point Source to Groundwater, 84

Fed. Reg. 16,810, 16,819–20 (Apr. 23, 2019).

8

these documents provided thorough and directed

analyses of the appropriateness of regulating point

source discharges that pass through groundwater.

For example, EPA’s 2001 notice for proposed CAFO

regulations addressed the issue at length, discussing

case law, academic commentary, and the agency’s

prior statements. It concluded that:

As a legal and factual matter, EPA has made

a determination that, in general, collected or

channeled pollutants conveyed to surface waters via ground water can constitute a discharge subject to the Clean Water Act. The

determination of whether a particular discharge to surface waters via ground water

which has a direct hydrologic connection is a

discharge which is prohibited without an

NPDES permit is a factual inquiry, like all

point source determinations.6

The 2001 proposal also discussed at length the types

of evidence that could be used to determine whether

there was a direct hydrologic connection between a

point source and jurisdictional surface waters.7

6 National Pollutant Discharge Elimination System Permit

Regulation and Effluent Limitations Guidelines and Standards

for Concentrated Animal Feeding Operations, 66 Fed. Reg.

2960, 3017 (proposed Jan. 12, 2001).

7 Id. at 3018-20.

The 2003 final rule did not incorporate the

specific requirements included in the proposal, instead adopting

a case-by-case approach while noting that “[n]othing in this rule

shall be construed to expand, diminish, or otherwise affect the

jurisdiction of the Clean Water Act over discharges to surface

water via groundwater that has a direct hydrologic connection

to surface water.” National Pollutant Discharge Elimination

9

In addition, a 1995 memorandum from the Director of the Office of Solid Waste reached the same

conclusion after explicitly considering the relationship between the CWA and RCRA with respect to

discharges

through

hydrologically-connected

groundwater.8 The memorandum explained that the

exclusion from the definition of “solid waste” of

“[i]ndustrial wastewater discharges that are point

source discharges subject to regulation under section

402 of the Clean Water Act,” 40 C.F.R. § 261.4(a)(2),

applied only to “the traditional pipe outfall-type

situation” because its purpose was “to avoid duplicative regulation under two statutes for discharges

that occur at the end-of-the-pipe (i.e., discharges

directly to surface water). EPA did not intend that

the exclusion cover groundwater discharges from

treatment processes that occur prior to the ‘end-ofthe-pipe’ discharge.”9 Therefore, the memorandum

concluded, discharges that pass through “groundwater from treatment and holding facilities” were subject to regulation both under RCRA and under the

NPDES program “where there is a direct hydrologic

System Permit Regulation and Effluent Limitation Guidelines

and Standards for Concentrated Animal Feeding Operations

(CAFOs), 68 Fed. Reg. 7176, 7216–17 (Feb. 12, 2003).

8 Memorandum from Michael Shapiro, Director, Office of Solid

Waste & Lisa K. Friedman, Associate General Counsel, Solid

Waste and Emergency Response Division, EPA, to Waste Management Division Directors, Interpretation of Industrial

Wastewater Discharge Exclusion From the Definition of Solid

Waste (Feb. 17, 1995), https://www3.epa.gov/npdes/pubs/owm60

7.pdf.

9 Id. at 2–3.

10

connection to nearby surface waters of the United

States.”10

Notably, at no point in any of these documents

did EPA claim to discern a reason to treat discharges

that pass through groundwater any differently from

other indirect discharges. Instead, EPA repeatedly

made the distinction between “regulat[ing] releases

of pollu[t]ants to groundwater,” on the one hand, 63

Fed. Reg. at 7878, and regulating “discharges to

surface water which occur via ground water because

of a direct hydrologic connection between the contaminated ground water and nearby surface water,”

on the other, 66 Fed. Reg. at 3016; see also 63 Fed.

Reg. at 7881. It was EPA’s understanding that only

the latter situation is subject to the NPDES program.

EPA continued to interpret the CWA in this fashion until a few months ago. Indeed, it articulated

this interpretation in its amicus brief before the

Court of Appeals in this case. EPA C.A. Br. 3–5, 11–

24. In the technical support document for the 2015

Clean Water Rule, EPA explained that “the agency

has a longstanding and consistent interpretation that

the Clean Water Act may cover discharges of pollutants from point sources to surface water that occur

via ground water that has a direct hydrologic connecThe decision of the

tion to the surface water.”11

10 Id. at 3.

This memorandum therefore anticipates and rebuts

the argument of amici Edison Electric Institute, et al., that

regulating discharges that pass through hydrologically connected groundwater under the NPDES program “would supplant

regulations promulgated under RCRA.” EEI Br. 33.

11 EPA, Response to Comments – Topic 10: Legal Analysis 383

11

Court of Appeals is consistent with this longstanding

interpretation and therefore represents no change in

the law.

B. EPA and State Guidance Documents Instruct Permit Writers to Address Discharges through HydrologicallyConnected Groundwater

Permit writers are EPA or state agency staff who

carry out the day-to-day implementation of the CWA

by incorporating its requirements into NPDES permits—issued either to individual dischargers (in the

case of individual permits) or to categories of dischargers (in the case of general permits). EPA and

state agencies issue manuals and other guidance

documents to assist permit writers in this task.

These guidance documents are therefore key evidence regarding the practical implementation of the

CWA. For decades, EPA and state manuals and

guidance documents have directed permit writers to

account for discharges that pass through hydrologically-connected groundwater when issuing NPDES

permits. EPA’s “longstanding and consistent interpretation” was not merely a series of abstract statements. Rather, it has been—and still is—the day-today practical reality for permit writers.

EPA instructed permit writers to regulate point

source discharges that pass through groundwater in

both the 1996 and 2010 editions of its NPDES Per-

(June 30, 2015) (emphasis added),

https://www.epa.gov/sites/production/files/201506/documents/cwr_response_to_comments_10_legal.pdf.

12

mit Writers’ Manual. The 1996 edition of this manual stated that if “there is a discharge to groundwater that results in a ‘hydrological connection’ to a

nearby surface water, the Director may require the

discharger to apply for an NPDES permit.”12 Similarly, the 2010 edition—which is the current version

of the manual—explained that “[i]f a discharge of

pollutants to ground water reaches waters of the

United States, however, it could be a discharge to the

surface water . . . that needs an NPDES permit.”13

EPA included similar instructions in more specific guidance to writers of particular kinds of NPDES

permits. In a 1993 manual regarding the development of best management practices for NPDES permits to avoid discharges of toxic or hazardous chemicals, EPA explained that “[w]hen identifying pathways and receptors, all logical alternative pathways

should be considered,” including through “groundwater,” and cautioned that in the construction and operation of “[s]ludge and waste storage disposal areas

including landfills, pits, ponds, lagoons, and deepwell injection sites, . . . there may be a potential for

leaching of toxic pollutants or hazardous substance

to groundwater, which can eventually reach surface

waters.”14 A decade later, another guidance docu12 EPA, EPA-833-B-96-003, U.S. EPA Permit Writers’ Manual

13 (1996), https://www3.epa.gov/npdes/pubs/owm0243.pdf.

13 EPA, EPA-833-K-10-001, NPDES Permit Writers’ Manual, at

1-7 (2010), https://www3.epa.gov/npdes/pubs/pwm_2010.pdf;

accord EPA Office of Wastewater Management, Water Permitting 101, at 6 (2002), https://www3.epa.gov/npdes/pubs/101pape.

pdf.

14 EPA Office of Water, EPA-833-B-93-004, Guidance Manual

13

ment explained that “[i]f contamination from storm

water that entered [an] aquifer shows up in a nearby

stream, it could be considered a discharge to waters

of the U.S. due to the hydrologic connection.”15

Similarly, the 1995, 2003, and 2012 EPA guidance documents for NPDES permitting for concentrated animal feeding operations (CAFOs) all describe the release of pollutants to surface water

through groundwater as potential point source discharges. The 1995 guidance stated that “[m]any

discharges of pollutants from a point source to surface water through groundwater (that constitutes a

direct hydrologic connection) also may be a point

source discharge to waters of the United States.”16

The 2003 guidance document identified “[d]epth to

ground water, [and] direct hydrologic connection to

waters of the United States”17 as among those factors

for Developing Best Management Practices (BMP), at 2-21, 2-3

(1993), https://www3.epa.gov/npdes/pubs/owm0274.pdf.

15 EPA, National Pollutant Discharge Elimination System

(NPDES) Storm Water Program Questions and Answers 7

(2004), https://www3.epa.gov/npdes/pubs/sw_qanda_entiredocu

ment.pdf.

16 EPA Office of Water, EPA-833-B-95-001, Guide Manual On

NPDES Regulations For Concentrated Animal Feeding Operations 3 (1995), https://www3.epa.gov/npdes/pubs/owm0266.pdf.

17 EPA Office of Wastewater Management, EPA-833-B-04-001,

NPDES Permit Writers’ Guidance Manual and Example

NPDES Permit for Concentrated Animal Feeding Operations 311, tbl. 3-3 (2003),

https://www3.epa.gov/npdes/pubs/cafo_permit_guidance_entirep

ub.pdf [hereinafter “2003 CAFO Manual”].

14

for permit writers to consider in determining whether an animal feeding operation is a significant contributor of pollutants to waters of the United States,

and therefore a CAFO subject to NPDES permitting.

The most recent and current version of this manual

retains this factor.18 In addition, an “Example Letter

in Follow-up to an Inspection” included as an appendix to the 2003 manual stated: “Please be advised

that any illicit discharges to surface water or to surface water through ground water are violations of the

Clean Water Act and subject to enforcement action

with penalties.”19 A reversal of the Court of Appeals

would disrupt permit writers’ current implementation of these EPA guidance documents.

The CWA initially assigned NPDES permitting

authority to EPA. Under the cooperative federalism

scheme created by the statute, however, states can

take over permitting for facilities within their borders as long as they satisfy certain minimum requirements and receive approval from EPA. 33

U.S.C. § 1342(b). At present, 47 states have assumed that authority.20 A number of states have

included instructions similar to those in the EPA

18 EPA Office of Water, EPA-833-F-12-001, NPDES Permit

Writers’ Manual for Concentrated Animal Feeding Operations 214, tbl. 2-3 (2012),

https://www3.epa.gov/npdes/pubs/cafo_permitmanual_entire.pd

f [hereinafter “2012 CAFO Manual”].

19 2003 CAFO Manual, supra note 17, at App. C-3 (emphasis

added).

20 State Program Authority, Tab 2 of NPDES State Program

Information, EPA, https://www.epa.gov/npdes/npdes-stateprogram-information#tab-2 (last visited July 17, 2019).

15

manuals described above in their permit writing

guidance. Thus, for example, Oregon has issued

guidance for municipal wastewater treatment plants

that, like the County’s, discharge to surface water

via groundwater.21 That guidance is unequivocal:

“the appropriate permit to use for this type of system

is an NDPES permit because the indirect discharge

by design will reach surface water.”22 Similarly,

Washington’s Department of Ecology has explained

that it “believes the best guidance on this issue

comes from” Washington Wilderness Coalition v.

Hecla Mining, 870 F. Supp. 983, 990 (E.D. Wash.

1994), which held that discharges that enter jurisdictional surface waters through groundwater required

a NPDES permit if the pollutants could “be traced

from their source to surface waters.”23 An EPA21 Oregon Dep’t of Envtl. Quality, Disposal of Municipal

Wastewater Treatment Plant Effluent by Indirect Discharge to

Surface Water via Groundwater or Hyporheic Water, Internal

Management Directive (IMD) (2007),

https://www.oregon.gov/deq/Filtered%20Library/IMDindirectdis

charge.pdf.

22 Id. at 1.

23 Wash. Dep’t of Ecology, Water Quality Program Permit Writ-

er’s Manual 9 (2018), https://fortress.wa.gov/ecy/publications/do

cuments/92109.pdf; see also Arizona Dep’t of Mines & Mineral

Resources, Arizona Mining Permitting Guide 109 (2011),

http://repository.azgs.az.gov/sites/default/files/dlio/files/nid1128/

arizona_mining_permitting_guide_2011.pdf (“[I]f there is a

discharge to ground water which results in a hydrologic connection to nearby surface waters, ADEQ may require the discharger to apply for an AZPDES permit.”); Virginia Dep’t of

Envtl. Quality, VPDES Permit Manual, at III-18 (2014),

https://www.deq.virginia.gov/Portals/0/DEQ/Water/PollutionDis

chargeElimination/VPDESPermitManual.pdf (“Storm water

16

funded evaluation of the potential development and

implementation of an authorized NPDES program by

the Lummi Nation also included similar guidance.24

C. EPA and the States Have Issued Many

NPDES Permits that Address Discharges that Pass through Groundwater to

Jurisdictional Surface Waters

Most importantly, both EPA and authorized

states have in fact regulated—and continue to regulate—point source discharges that enter navigable

waters via groundwater in both individual and general NPDES permits. The existence of these permits,

some of which date back almost three decades,

demonstrates both that the decision of the Court of

Appeals represents the regulatory status quo and—

as will be discussed in more detail below—that the

regulation of such discharges is administratively

feasible.

EPA has issued many such permits itself. For

example, at various times EPA has issued general

permits that address discharges through hydrologically-connected groundwater for CAFOs in Idaho,

New Mexico, Louisiana, New Mexico, Oklahoma, and

discharges to ground water are exempt from the permitting

requirements, unless there is a hydrological connection between

the ground water and a nearby surface waterbody.”).

24 Lummi Natural Resources Dep’t, Evaluation Report on the

Development and Implementation of a Lummi Nation NPDES

Program 16–17 (2005),

https://www.lummi-nsn.gov/userfiles/83_NPDES%20Delegation

%20ReportFINAL.pdf.

17

Texas, and on tribal lands in New Mexico and Oklahoma.25 It has also issued individual permits that

address such discharges to wastewater treatment

plants,26 mines,27 and an oil field fluids treatment

25 EPA Region 10, Authorization to Discharge Under the Na-

tional Pollutant Discharge Elimination System for Concentrated Animal Feeding Operations, No. IDG010000, Part III.D.1 (p.

30) (Mar. 29, 2012), https://www.epa.gov/sites/production/files/2

017-12/documents/r10-npdes-idaho-cafo-gp-id010000-finalpermit-2012.pdf; EPA Region 6, National Pollutant Discharge

Elimination System (NPDES) General Permit for Discharges

from Concentrated Animal Feeding Operations (CAFOs) in New

Mexico, No. NMG010000, at Part II.A.2(b)(vi) (pp. 3–4 of Part

II) (July 14, 2016), https://www.env.nm.gov/wp-content/uploads/

2017/07/NMG010000-CAFO-NM-20160901.pdf; National Pollutant Discharge Elimination System General Permit and Reporting Requirements for Discharges From Concentrated Animal

Feeding Operations, 58 Fed. Reg. 7610 , 7631 (Feb. 8, 1993).

26 EPA Region 10, Authorization to Discharge Under the National Pollutant Discharge Elimination System, Taholah Village

Wastewater Treatment Plant, No. WA0023434 (June 4,

2015), https://www.epa.gov/sites/production/files/2017-09/docum

ents/r10-npdes-taholah-wa0023434-final-permit-2015.pdf

[hereinafter “Taholah Permit”]; EPA Region 5, Authorization to

Discharge Under the National Pollutant Discharge Elimination

System, Neopit Wastewater Treatment Facility, No. WI0073059-2 (Sept. 22,

2016), https://www.epa.gov/sites/production/files/2017-02/docum

ents/wi0073059fnlprmt09_22_2016_0.pdf [hereinafter “Neopit

Permit”].

27 EPA Region 6, Authorization to Discharge Under the Nation-

al Pollutant Discharge Elimination System, Questa Mine, No.

NM0022306, at Part II.D (Sept. 30, 2013), https://www.env.nm.

gov/swqb/NPDES/Permits/NM0022306-Chevron-Questa.pdf;

EPA Region 6, Fact Sheet, Molycorp, Inc., NPDES Permit No.

NM0022306, at 4-6 (May 16, 2006), http://clinics.law.harvard.ed

u/environment/files/2019/07/Molycorp-Fact-Sheet.pdf [hereinafter “Molycorp Fact Sheet”].

18

and disposal facility.28 As recently as last year, EPA

issued a draft individual permit for a CAFO in New

Hampshire that:

requires the permittee to document that no

direct hydrologic connection exists between

the contained wastewater and surface waters

of the United States. Where the permittee

cannot document that no direct hydrologic

connection exists, the ponds, lagoons and basins of the containment facilities must have a

liner which will prevent the potential contamination of surface waters.”29

This permit tracks EPA’s guidance that “requirements might address, for example, the use of liners

in areas where there is the potential to discharge to

groundwater that has a direct hydrologic connection

to waters of the U.S.”30

Similarly, many states with authorized NPDES

programs have issued draft or final permits that

28 EPA Region 6, Statement of Basis, US Liquids of Louisiana,

Ltd., NPDES Permit No. LA0068420 (May 9, 1997),

http://clinics.law.harvard.edu/environment/files/2019/07/USLiquids-of-Louisiana-Statement-of-Basis.pdf; see Molycorp Fact

Sheet, supra note 27, at 7 (mentioning final US Liquids of

Louisiana, Ltd. permit from 1999 as an example of a permit

that “address[es] discharges having the potential to flow into

ground water which is hydrologically connected to surface

waters”).

29 EPA Region 1, Fact Sheet, Forbes Farm Partnership, Inc.,

NPDES Permit No. NH0023540, at 30 (2018), https://www.epa.

gov/sites/production/files/2018-04/documents/draftnh0023540pe

rmit.pdf.

30 2012 CAFO Manual, supra note 18, at 5-17; see id. O-25.

19

address discharges that pass through hydrologicallyconnected groundwater.

These permits include

CAFO general permits issued by Oklahoma, Tennessee, and Texas,31 California’s 2014 General Permit

for Storm Water Discharges Associated with Industrial Activities,32 Colorado’s General Permit for Discharges from Sand and Gravel Mining and Processing,33 as well as draft or final individual permits

from Arizona,34 Colorado,35 Minnesota,36 and Mon31 Tex. Comm’n on Envtl. Quality, General Permit to Discharge

Wastes, TPDES General Permit No. TXG920000, at 33–

36 (July 10, 2014), https://www.tceq.texas.gov/assets/public/per

mitting/wastewater/general/txg920000.pdf; Tenn. Dep’t of Env’t

& Conservation, General State Operating Permit for Concentrated Animal Feeding Operations, No. SOPC00000, at 12–

13 (Aug. 1, 2015), https://www.tn.gov/content/dam/tn/environme

nt/water/documents/permit_water_sopc00000_pmt.pdf; Oklahoma Dep’t of Agric., Food, & Forestry, Agriculture Pollutant

Discharge Elimination System (AgPDES) General Permit for

Discharges from Concentrated Animal Feeding Operations

(CAFOs) in Oklahoma, AgPDES Permit No. OKG010000, at II4, III-10-11 (Mar. 30, 2017), https://www.oda.state.ok.us/aems/O

klaho-ma%20AgPDES%20CAFO%20General%20Permit%20OK

G01000%202017-2022.pdf.

32 Cal. State Water Resources Control Board, NPDES General

Permit For Storm Water Discharges Associated With Industrial

Activities, Order NPDES No. CAS000001, Fact Sheet at 72

(Apr. 1, 2014),

https://www.waterboards.ca.gov/board_decisions/adopted_order

s/water_quality/2014/wqo2014_0057_dwq_rev_mar2015.pdf

[hereinafter “California Storm Water Permit”].

33 Colo. Dep’t of Public Health & Env’t, Colorado Discharge

Permit System (CDPS) Fact Sheet to Permit Number

COG5000000, at 12 (Oct. 13, 2016), https://www.colorado.gov/pa

cific/sites/default/files/WQ_PER_COG500000_FS_1.pdf.

34 Ariz. Dep’t of Envtl. Quality, Draft Fact Sheet, Arizona Pollu-

20

tana.37 Cumulatively, these permits represent decades of experience, current practice, and—given the

tion Discharge Elimination System (AZPDES) Permit No.

AZ0026174, at 3 (July 14, 2017),

http://static.azdeq.gov/pn/fs_azpdes_alpine.pdf [hereinafter

“Alpine Fact Sheet”].

35 Authorization to Discharge under the Colorado Discharge

Permit System (Jan. 26, 2012); Colorado Discharge Permit

System (CDPS) Fact Sheet to Permit Number CO0041351,

Western Sugar Cooperative, Fort Morgan Facility (Jan. 26,

2012) [hereinafter “Western Sugar Cooperative Fact Sheet”].

Both documents can be downloaded

from https://environmentalrecords.colorado.gov/HPRMWebDra

wer/Record?q=containerEx:32656.

36 Minn. Pollution Control Agency, National Pollutant Discharge Elimination System/State Disposal System

(NPDES/SDS) Permit Program Fact Sheet, Permit No.

MN0071013, at 62 (Jan. 31, 2018), https://www.pca.state.mn.us/

sites/default/files/wq-wwprm1-51gg.pdf; see also Letter from

Kevin M. Pierard, Chief NPDES Programs Branch, EPA Region

5, to Ann Foss, Metallic Mining Sector Director, Minnesota Pollution Control Agency, at 2 (Nov. 3, 2016), https://www.ee

news.net/assets/2019/01/16/document_daily_01.pdf (“EPA’s

position as explained above is consistent with EPA’s past interpretation that the CWA applies to discharges of pollutants from

a point source to waters of the United States, including those

made through a ground water hydrologic connection.”).

37 Mont. Dep’t of Envtl. Quality, Authorization to Discharge

Under the Montana Pollutant Discharge Elimination System,

Permit No. MT0021849, at 3 (Jan. 11, 2014),

http://deq.mt.gov/Portals/112/Water/WPB/MPDES/Majors/MT0

021849PER.pdf [hereinafter “City of Sidney Permit”]; Tintina

Montana, Inc., Integrated Discharge Permit Application Narrative Black Butte Copper Project Meagher County, Montana, at 3-1 (Dec. 11, 2017), https://deq.mt.gov/Portals/1

12/Land/Hardrock/Documents/TintinaMines/R17%20Permit%2

0Application%20Narrative.pdf.

21

broad applicability of the general permits cited

above—the likely regulation of thousands of facilities.38

II. Regulating Discharges that Pass through

Groundwater is Administratively Feasible

An examination of the NPDES permits issued by

EPA and the States that address discharges through

hydrologically-connected groundwater demonstrates

the feasibility of regulating such discharges. Agencies have well-established tools for determining when

discharges necessitating a NPDES permit occur,

establishing discharge limits, and identifying monitoring locations to ensure compliance. In addition,

the requirements imposed under such permits are

not overly burdensome on EPA, states, or regulated

parties.

A. It is Feasible to Determine when a Facility Needs a NPDES Permit for Discharges that Pass through Groundwater

As EPA has explained, “[t]he determination of

whether a particular discharge to surface waters via

ground water which has a direct hydrologic connection is a discharge which is prohibited without an

38 EPA has also brought at least one enforcement action against

an entity that EPA alleged was violating the CWA by discharging pollutants to navigable waters via groundwater without a

NPDES permit. See Notice of Lodging of Consent Decree Pursuant to the Clean Water Act; ConAgra, Inc., 63 Fed. Reg.

55,409 (Oct. 15, 1998) (explaining that a consent decree terminating an EPA enforcement action addresses “violations of the

CWA . . . including . . . unauthorized discharges of pollutants to

surface waters via . . . hydrologically connected groundwater”).

22

NPDES permit is a factual inquiry, like all point

source determinations.” 66 Fed. Reg. at 3017. Such

determinations are manageable both for agencies

and dischargers.

In many cases, it will be readily apparent to the

operator of a facility that its operations will lead to

discharges to surface waters. For example, “[i]n the

absence of appropriate precautions, the on-site impoundments” where coal-fired power plants located

adjacent to navigable waters dispose of coal ash

“obviously pose significant risks of leaks that contaminate navigable waters by traveling through

groundwater.”39

Even when the existence of a discharge is not so

obvious, there are standard tools and sources of information that agencies and permittees can use. In

the preamble to its 2001 proposed CAFO regulations,

EPA identified several sources that could help regulated entities in determining whether their discharges to groundwater had a direct hydrologic connection

to jurisdictional surface waters. These include proximity to surface waters; whether the discharge occurs in sensitive geologic or hydrogeologic settings,

such as “karst, fractured bedrock or other shallow/unconsolidated aquifers;” and United States

Geological Survey (USGS) maps of Hydrologic Landscape Regions (HLRs). 66 Fed. Reg. at 3018-20.

39 Comment of Attorneys General of Maryland, California,

Massachusetts, Oregon, and Vermont on Clean Water Act

Coverage of “Discharges of Pollutants” via a Direct Hydrologic

Connection to Surface Water (EPA-HQ-OW-2018-0063; FRL9973-41-OW), at 8 (May 21, 2018).

23

Moreover, a standard requirement in NPDES

general permits for facilities with disposal ponds,

such as CAFOs, is that the permittee either install a

liner around the pond or demonstrate the lack of a

hydrologic connection between the pond and surface

waters.40 For example, Oklahoma’s CAFO general

permit requires a certification from an engineer that

“leakage will not migrate to a surface water.”41 The

certification must include “maps showing ground

water flow paths, or that the leakage enters a confined environment” as well as “information on the

hydraulic conductivity and thickness of the natural

materials underlying and forming the walls of the

containment structure up to the wetted perimeter.”42

Neither the County nor its amici have suggested that

the requirement to make such determinations, which

are likely in force for thousands of facilities around

the country, are unmanageable.

40 See 2012 CAFO Manual, supra note 18, at O-25 to O-26

(providing EPA guidance on liner requirements).

41 Oklahoma Dep’t of Agric., Food, & Forestry, AgPDES Permit

No. OKG010000, supra note 31, at III-11.

42 Id.

Other general permits including a similar requirement to

document a lack of hydrological connection include EPA Region

6’s 1993 CAFO general permit, 58 Fed. Reg. at 7631; California

Storm Water Permit, supra note 32, at 72-73; EPA Region 10’s

2012 general permit for CAFOs in Idaho, Authorization to

Discharge Under the National Pollutant Discharge Elimination

System for Concentrated Animal Feeding Operations, No.

IDG010000, supra note 25; Texas’s 2014 CAFO general permit,

Tex. Comm’n on Envtl. Quality, TPDES General Permit No.

TXG920000, supra note 31, at 33-36; and Tennessee’s 2015

CAFO general permit, Tenn. Dep’t of Env’t & Conservation,

General State Operating Permit for Concentrated Animal

Feeding Operations, No. SOPC00000, supra note 31, at 12-13.

24

B. NPDES Permitting Requirements for

Discharges that Pass through Groundwater are not Overly Burdensome

Existing NPDES permits demonstrate the range

of permitting strategies and requirements that can

be applied to discharges that pass through groundwater. These methods include absolute prohibitions

on discharges from certain locations, pre-treatment

requirements, interception wells to remove contaminated water for treatment, and numeric effluent

limitations that can be enforced at various locations,

including downgradient monitoring wells. All of

these requirements have successfully been incorporated into NPDES for many years, demonstrating

the feasibility of these approaches.

A number of permits include complete prohibitions on discharges from particular locations. As

mentioned above, it is common for CAFO general

permits to specify that ponds, pits, or lagoons operated by the permittee be properly lined to prevent the

migration of pollutants into groundwater. Thus a

CAFO general permit issued in 1993 by EPA Region

6 required that permittees install a liner in all

wastewater retention ponds, lagoons, and basins,

unless the permittee could demonstrate that “no

significant hydrologic connection exists between the

contained wastewater and surface waters of the

United States.”43

43 58 Fed. Reg. at 7631; see sources cited in footnote 42, supra.

Another permit with a similar requirement is EPA Region 6’s

1999 NPDES permit for the US Liquids of Louisiana oil field

liquids treatment and disposal facility. According to the 1997

Statement of Basis for the permit, the facility “dewater[s] the

25

Another option for discharges from a disposal

pond or similar structure is to require pre-treatment

of the wastewater before it enters the pond. For

example, the Arizona Department of Environmental

Quality has issued a draft permit for the Alpine Sanitary District. The District treats its wastewater by

disposing of it in “three lined lagoons which provide

primary and secondary treatment through sedimentation and anaerobic digestion.”44 When these ponds

do not have sufficient capacity, the permit authorizes

the “discharge of excess effluent from Pond #3 to

Pond #4, which will serve as an unlined infiltration/evaporation basin.”45 However,

[d]ue to the shallow depth to groundwater,

the close proximity of Pond # 4 to the San

Francisco River, and Pond # 4 being in the

100 year flood plain, ADEQ considers the hydrologic connectivity of infiltration from Pond

#4 to the San Francisco River as discharge to

a water of the US.46

fluids in large treatment cells, store[s] the solids, and inject[s]

the associated water and storm water.” EPA Region 6, Statement of Basis, US Liquids of Louisiana, Ltd., NPDES Permit

No. LA0068420, supra note 28, at 3. EPA indicated that “[t]he

permittee will be required to prove that there is no hydrologic

connection between the treatment cells and surface waters. If

they are unable to prove such a connection does not exist, they

will be required to install liners in the treatment cells.” Id. at

4.

44 Alpine Fact Sheet, supra note 34, at 2.

45 Id.

46 Id. at 3.

26

Thus, to ensure that these discharges do not exceed

applicable effluent limitations, the draft permit requires that “[e]ffluent from Pond #3 will be pumped

to a disinfection system to be chlorinated and dechlorinated prior to being discharged to Pond #4” and

that “phosphorus reduction will be achieved by applying ferric chloride to Pond #3 prior to discharging.”47

Another approach is to require that the permittee intercept and remove contaminated water by

means of pumping before it enters surface waters.

For example, the 2006 NPDES permit for the Chevron Questa Mine in New Mexico (formerly owned by

Molycorp Inc.) required that the facility operate a

“seepage interception system” including extraction

wells in order to prevent the discharge of pollutants

to the Red River through groundwater.48 EPA reissued the permit in 2013, retaining this requirement.49 The Response to Comments for the 2013

permit explained that the permit imposed controls on

47 Id. at 2.

Similarly, the permit for the City of Sidney

Wastewater Treatment Facility in Montana requires ultraviolet

disinfection before wastewater is discharged into infiltration/percolation cells, from which it is discharged through

groundwater into the Yellowstone River. City of Sidney Permit,

supra note 37, at 3.

48 EPA Region 6, Authorization to Discharge under the National

Pollutant Discharge Elimination System, Permit No.

NM0022306, at II-1 (Aug. 29, 2006), https://semspub.epa.gov/wo

rk/06/619835.pdf.

49 EPA Region 6, Authorization to Discharge under the National

Pollutant Discharge Elimination System, Permit No.

NM0022306, at II-2 (Sept. 30, 2013), https://www.env.nm.gov/s

wqb/NPDES/Permits/NM0022306-Chevron-Questa.pdf.

27

seepage because “EPA has the jurisdiction under the

CWA to regulate or eliminate seepage which reaches

the waters of the US through hydrologic connection.”50 The fact sheet for the 2006 permit describes

how the permittee “installed interception wells to

capture the plume from the tailings pond.”51 EPA

concluded that because “the ground water plume

from the tailings ponds is successfully captured by”

the permittee, “no additional permit requirements

are proposed.”52

In addition, some permits incorporate numeric

effluent limitations. Thus the permit for the Western Sugar Cooperative sugar beet processing facility,

issued by the Colorado Department of Public Health

and Environment in 2012, requires that discharges

into unlined disposal ponds meet numeric limits for

oil and grease, pH, E. coli, ammonia, sulfide, chloride, temperature, and electrical conductivity.53

Similarly, the draft Alpine Sanitary District permit

described above includes numerical limits on, among

50 EPA Region 6, NPDES Permit No. NM0022306 – Response

to Comments 18 (Sept. 30, 2013), https://www.env.nm.gov/swqb/

NPDES/Permits/NM0022306-Chevron-Questa.pdf.

51 Molycorp Fact Sheet, supra note 27, at 4.

52 Id. The Fact Sheet cites several other NPDES permits that

included similar requirements. Id. at 6-7 (citing NPDES permits AZ0022705 (1999), AZ0020389 (2000), and AZ0020516

(2000)).

53 Western Sugar Cooperative Fact Sheet, supra note 35, at 18-

23.

28

other things, chlorine, E. coli, and pH for discharges

into the unlined infiltration/evaporation basin.54

Permits can require monitoring of compliance either with numeric limitations or with discharge

prohibitions at various locations. For example, the

2016 NPDES permit for the Neopit Wastewater

Treatment Facility operated by the Menominee Tribal Utilities in Wisconsin applies to a facility that

discharges wastewater from a settling pond to seepage cells. From the seepage cells, the effluent passes

through groundwater before reaching Tourtillotte

Creek, a water of the United States.55 The permit

requires that the facility take effluent samples from

the settling pond (before effluent enters the seepage

cells) as well as samples from downgradient monitoring wells.56 Similarly, the 2015 permit for the

Taholah Village Wastewater Treatment Plant requires monitoring of effluent before it enters rapid

infiltration basins as well as monitoring of the receiving water—the Quinault River.57

Colorado’s

permit for the Western Sugar Cooperative sugar beet

processing facility treats unlined ponds as a point

source and requires samples from the ponds as dis54 Alpine Fact Sheet, supra note 34, at 8-10; see also Neopit

Permit, supra note 26, at I-4 (describing limits for biological

oxygen demand, total dissolved solids, chloride, nitrogen, nitrite, and nitrate); City of Sidney Permit, supra note 37, at 4

(containing numerical limits on biological oxygen demand, total

suspended solids, pH, nitrogen, and phosphorus).

55 Neopit Permit, supra note 26, at I-1.

56 Id. at I-4, I-6.

57 Taholah Permit, supra note 26, at 6-9.

29

charge monitoring.58 In deciding on this monitoring

strategy, the agency considered other compliance

monitoring points, including monitoring wells and

lysimeters, further demonstrating the variety of

approaches available to permit writers.

These permits demonstrate the range of options

available to address discharges that enter surface

waters by passing through groundwater. It is feasible for agencies to identify when such discharges

occur, to develop either numeric limits or other permit provisions to address them, and to monitor the

permittee’s compliance with the permit’s requirements.

III. Reversal of the Court of Appeals Would

Disrupt Existing Protections against Significant Harms that are not Addressed by Other Statutes

A ruling that discharges which reach surface waters by passing through groundwater are exempt

from the NPDES program would disrupt the regulatory status quo and leave a significant gap in protection. Several of the County’s amici suggest that

NPDES permitting of such discharges is unnecessary

and duplicative. See, e.g., EEI Br. 32-40; KMEP Br.

20-26; NACWA Br. 29-37. As Respondents explain,

however, these other laws are not adequate substitutes for the CWA’s protections. Resp. Br. 49-52.

For example, RCRA is aimed at the disposal of “hazardous” waste, but does not address many of the

conventional pollutants such as pH, biological oxygen

58 Western Sugar Cooperative Fact Sheet, supra note 35, at 6,

30.

30

demand, and total suspended solids regulated by the

NPDES permits described above. In addition, the

SDWA and state groundwater protection laws are

aimed at avoiding harm to groundwater (in the case

of the SDWA, to underground drinking water sources

in particular) rather than harm to surface waters.

These statutes therefore do not provide a reason to

ignore the plain text of the CWA. POM Wonderful

LLC v. Coca-Cola Co., 573 U.S. 102, 115 (2014)

(“When two statutes complement each other, it

would show disrespect for the congressional design to

hold that Congress nonetheless intended one federal

statute to preclude the operation of the other.”).59

59 Ironically, however, state groundwater protection laws—

while not a substitute for the CWA’s protections—do rebut

Petitioner and EPA’s arguments that NPDES permitting of

discharges that pass through groundwater is impractical.

Many of the tools included in the state groundwater protection

laws that they tout are similar to the very aspects of NPDES

permitting that they claim are unmanageable. For example, a

number of states prohibit unpermitted discharges of pollutants

into groundwater. West Virginia Br. 21-24. Moreover, some

states prohibit groundwater discharges that adversely affect

surface water quality or cause violations of surface water quality standards. See, e.g., Ariz. Admin. Code R18-11-405.B; Fla.

Admin. Code r. 62-520.-310(2); 314 Mass. Code Regs. 5.09(1).

Permits that comply with these requirements raise many of the

same practical concerns—such as the need to develop modeling

or other methods to “account for how effluent changes physically and chemically between the point source” and the receiving

water, NACWA Br. 19, or the permittee’s inability to “control

changes to its effluent quality between the outfall and entry

into” the designated receiving water, id. at 20—that are potentially implicated by NPDES permits for discharges that pass

through groundwater.

To be clear—none of this is to suggest that such laws are a

31

Overturning the decision of the Court of Appeals

would cause significant regulatory disruption. The

number of dischargers who would be affected by the

elimination of these existing NPDES permit protections is likely in the thousands. Many of the permits

identified above are general permits, which therefore

apply to large numbers of sources. NPDES general

permits currently in effect that directly address discharges that pass through groundwater include

CAFO general permits in Idaho, New Mexico, Oklahoma, Tennessee, and Texas.60 They also include

California’s General Permit for Storm Water Discharges Associated with Industrial Activities and

Colorado’s General Permit for Discharges from Sand

and Gravel Mining and Processing.61

In addition, discharges that pass through

groundwater to surface waters can cause significant

harms. For example, discharges from CAFOs can

cause nitrate pollution, harmful algal blooms, and

transmission of disease-causing microorganisms.62

substitute for the CWA’s protections. They do not address the

same harms and they do not provide nationwide protection.

But they do provide additional evidence—on top of the examples from the NPDES permits discussed above—of the feasibility of using permits to address the impacts to surface waters of

discharges that pass through groundwater.

60 See sources cited in footnotes 25 & 31, supra.

61 See sources cited in footnotes 32–33, supra.

62 See, e.g., JoAnn Burkholder et al., Impacts of Waste from

Concentrated Animal Feeding Operations on Water Quality, 115

Envtl. Health Persp. 308 (2007); U.S. Fish & Wildlife Service &

EPA Region 6, Environmental Contaminants Associated with a

Swine Concentrated Animal Feeding Operation and Implica-

32

These discharges are not infrequent. EPA noted in

its response to comments on the 2009 New Mexico

CAFO General Permit that “[s]ince the issuance of

the 1993 permit, EPA has observed that many liners

leak and discharge to groundwater which eventually

discharges to surface water, via a hydrologic connection.”63 In 2004, EPA completed a Risk Assessment

Evaluation for Concentrated Animal Feeding Operations, which noted that “[n]utrients, pathogenic organisms, hormones and metals may easily reach

waterbodies” from, among other pathways, “groundwater flow.”64

The same report observed that

“groundwater flow is the primary contributor of nitrate to surface water from agriculture.”65

Mines are another important source of discharges through groundwater. A 1993 letter prepared by

EPA Region 8 discusses the agency’s evaluation of

how “pollutants from some mining sites are moving

tions for McMurtrey National Wildlife Refuge 7-19

(2004), https://ecos.fws.gov/ServCat/DownloadFile/21670?Refere

nce=23151.

63 Response to Comments on the Proposed National Pollutant

Discharge Elimination System (NPDES) General Permit for

Discharges from Concentrated Animal Feeding Operations

(CAFOs) in New Mexico (NMG010000), at 21 (2009) (emphasis

added),

http://clinics.law.harvard.edu/environment/files/2019/07/NMCAFO-General-Permit-Response-to-Comments.pdf.

64 EPA, Risk Assessment Evaluation for Concentrated Animal Feeding Operations 4 (2004), https://nepis.epa.gov/Exe/ZyP

DF.cgi/901V0100.PDF?Dockey=901V0100.PDF.

65 Id. at 25.

33

into the ground water and then into nearby surface

water” and how these discharges either were not

authorized by the mines’ NPDES permits or that the

mines had claimed to be non-discharging and therefore did not have permits.66 These discharges were

causing “serious water quality problems at some

mines.”67 To address these harms, the letter concluded, “facilities are now being required to obtain

NPDES permits covering all outfalls including

ground water discharges determined to be hydrologically connected to surface water.”68

NPDES permit writers have continued to rely on

this conclusion. Thirteen years later, the NPDES

fact sheet for the Questa mine cited this letter in

support of regulating discharges via groundwater.69

And as EPA’s hard rock mining framework observes,

“[r]eleases of pollutants . . . indirectly via ground

water that has a hydrological connection to surface

water” are a potential environmental impact to surface water from mining.70

66 Letter from Max H. Dodson, Director, Water Management

Division, EPA Region 8, to Dan Fraser, Chief, Water Quality

Bureau, Montana Department of Health & Environmental Sciences, NPDES Permit Issues Hard Rock Mines, at 2 (Dec.

22, 1993), http://www.sec.nv.gov/appeal_docs/epa_letter_cwa_1

22293.pdf.

67 Id.

68 Id.

69 Molycorp Fact Sheet, supra note 27, at 6-7.

70 EPA Office of Water, EPA’s National Hardrock Min-

ing Framework, at B-3 (1997), https://www.epa.gov/sites/produc

tion/files/2015-10/documents/hardrock_mining_framework_0.pd

f. EPA has been issuing NPDES permits to mines that address

34

Because of their need for cooling water, coal-fired

power plants—and their associated coal ash impoundments—are typically located next to rivers or

other navigable waters. These impoundments, such

as those at issue in Kentucky Waterways Alliance v.

Kentucky Utilities Company, 905 F.3d 925 (6th Cir.

2018), are sources of arsenic, chromium, selenium,

lead, and other heavy metals.71 These toxic pollutants leak from unlined impoundments into shallow

groundwater, and from there, into adjacent surface

waters.72

In short, the existing regime, under which discharges through hydrologically-connected groundwater are regulated under the NPDES program, is

needed to address serious threats to water quality

that are not dealt with by other statutes. A decision

reversing the Court of Appeals would disrupt the

implementation of these NPDES permits, create a

their discharges that pass through groundwater for decades, yet

there is no evidence that this practice has harmed the mining

industry.

71 EPA, EPA-600/R-09/151, Characterization of Coal Combus-

tion Residues from Electric Utilities – Leaching and Characterization Data Hazardous and Solid Waste Management System

(2009), https://nepis.epa.gov/Exe/ZyPDF.cgi/P1007JBD.PDF?Do

ckey=P1007JBD.PDF; Disposal of Coal Combustion Residuals

From Electric Utilities, 80 Fed. Reg. 21,302, 21,456–57 (Apr. 17,

2015).

72 Jennifer S. Harkness et al., Evidence for Coal Ash Ponds

Leaking in the Southeastern United States, 50 Envtl. Sci. &

Technology 6583, 6591 (2016) (“[T]he results presented in this

study suggest significant releases of coal ash impacted water to

the environment.”).

35

significant loophole, and put the water bodies protected by these permits—and the people who depend

upon them—at risk.

CONCLUSION

For the foregoing reasons, the Court should affirm the judgment of the Ninth Circuit.

Respectfully submitted,

SHAUN A. GOHO

Counsel of Record

EMMETT ENVIRONMENTAL

LAW & POLICY CLINIC

HARVARD LAW SCHOOL

6 Everett St., Suite 5116

Cambridge, MA 02138

617-496-2058

sgoho@law.harvard.edu

Counsel for Amici Curiae

July 19, 2019

This is a copy of a public record, reproduced as it was published. It is not legal advice, and it may not be the version a court would rely on. Check the official source before you cite it.

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