# Public Health Service Agencies: Overview and Funding (FY2015-FY2017)

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URL: https://www.frixlaw.com/law-library/documents/crs%3AR44505

## Record

- **Collection:** Congressional research report
- **Document type:** CRS Report
- **Published:** May 19, 2016
- **Citation:** R44505

## Text

Public Health Service Agencies: Overview and
Funding (FY2015-FY2017)
(name redacted), Coordinator
Specialist in Health Policy
(name redacted), Coordinator
Analyst in Health Policy
(name redacted)
Analyst in Health Policy
(name redacted)
Specialist in Health Services
(name redacted)
Specialist in Biomedical Policy
(name redacted)
Specialist in Public Health and Epidemiology
(name redacted)
Specialist in Health Policy
May 19, 2016

Congressional Research Service
7-....
www.crs.gov
R44505

Public Health Service Agencies: Overview and Funding (FY2015-FY2017)

Summary
Within the Department of Health and Human Services (HHS), eight agencies are designated
components of the U.S. Public Health Service (PHS). The PHS agencies are funded primarily
with annual discretionary appropriations. They also receive significant amounts of funding from
other sources including mandatory funds from the Affordable Care Act (ACA), user fees, and
third-party reimbursements (collections).
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The Agency for Healthcare Research and Quality (AHRQ) funds research on
improving the quality and delivery of health care. For several years prior to
FY2015, AHRQ did not receive its own annual appropriation. Instead, it relied on
redistributed (“set-aside”) discretionary funds from other PHS agencies for most
of its funding, with supplemental amounts from the ACA’s mandatory PatientCentered Outcomes Research Trust Fund (PCORTF). In FY2015 and FY2016,
AHRQ received its own discretionary appropriation in lieu of set-aside funds,
with the FY2016 level of $428 million below the FY2015 level of $443 million.
The Centers for Disease Control and Prevention (CDC) is the federal
government’s lead public health agency. CDC obtains its funding from multiple
sources besides discretionary appropriations. The agency’s funding level has
fluctuated in the past few years, with the FY2016 level of $11.8 billion above the
FY2015 level of $11.2 billion. The Agency for Toxic Substances and Disease
Registry (ATSDR) investigates the public health impact of exposure to
hazardous substances. ATSDR is headed by the CDC director and included in the
discussion of CDC in this report.
The Food and Drug Administration (FDA) regulates drugs, medical devices,
food, and tobacco products, among other consumer products. The agency is
funded with annual discretionary appropriations and industry user fees. The
FDA’s funding level in FY2016 was $4.7 billion—above the FY2015 level of
$4.5 billion—with user fees accounting for about 43% of FDA’s total funding.
The Health Resources and Services Administration (HRSA) funds programs
and systems that provide health care services to the uninsured and medically
underserved. HRSA, like CDC, relies on funding from several different sources.
The agency’s funding increased from $10.6 billion in FY2015 to $10.8 billion in
FY2016.
The Indian Health Service (IHS) supports a health care delivery system for
Native Americans. IHS’s funding, which includes discretionary appropriations
and collections from third-party payers of health care, increased between FY2015
and FY2016 from $5.9 billion to $6.2 billion. Appropriations and collections both
increased during that period.
The National Institutes of Health (NIH) funds basic, clinical, and translational
biomedical and behavioral research. NIH gets more than 99% of its funding from
discretionary appropriations. Recent increases in NIH’s annual appropriations
have boosted its funding level to a new high of $32.3 billion in FY2016,
compared to $30.3 billion in FY2015.
The Substance Abuse and Mental Health Services Administration
(SAMHSA) funds mental health and substance abuse prevention and treatment
services. SAMHSA’s funding, about 95% of which comes from discretionary

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Public Health Service Agencies: Overview and Funding (FY2015-FY2017)

appropriations, was approximately $3.6 billion in FY2015 and $3.7 billion in
FY2016.
This report is a new edition of an earlier product, which remains available: CRS Report R43304,
Public Health Service Agencies: Overview and Funding (FY2010-FY2016). It will be updated
with information on PHS agency funding for FY2017 once legislative action on appropriations
for the new fiscal year is completed.

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Public Health Service Agencies: Overview and Funding (FY2015-FY2017)

Contents
Introduction to the PHS Agencies ................................................................................................... 1
Sources of PHS Agency Funding .................................................................................................... 2
Secretary’s Transfer Authority .................................................................................................. 2
PHS Evaluation Set-Aside ........................................................................................................ 3
Mandatory Funding, User Fees, and Collections ...................................................................... 4
Mandatory Appropriations .................................................................................................. 5
User Fees............................................................................................................................. 5
Collections .......................................................................................................................... 6
Recent Trends in PHS Agency Funding .......................................................................................... 6
Impact of Budget Caps and Sequestration ................................................................................ 6
Mandatory Spending ........................................................................................................... 7
Discretionary Spending....................................................................................................... 8
Mandatory Funding Proposals for FY2017 ............................................................................... 9
Report Roadmap .............................................................................................................................. 9
Agency for Healthcare Research and Quality (AHRQ) ................................................................ 10
Agency Overview.................................................................................................................... 10
Recent Trends in Agency Funding .......................................................................................... 12
Centers for Disease Control and Prevention (CDC) ...................................................................... 13
Agency Overview.................................................................................................................... 13
Recent Trends in Agency Funding .......................................................................................... 13
Food and Drug Administration (FDA) .......................................................................................... 16
Agency Overview.................................................................................................................... 16
Recent Trends in Agency Funding .......................................................................................... 18
Health Resources and Services Administration (HRSA) .............................................................. 20
Agency Overview.................................................................................................................... 20
Recent Trends in Agency Funding .......................................................................................... 21
Indian Health Service (IHS) .......................................................................................................... 24
Agency Overview.................................................................................................................... 24
Recent Trends in Agency Funding .......................................................................................... 25
National Institutes of Health (NIH) ............................................................................................... 26
Agency Overview.................................................................................................................... 26
Recent Trends in Agency Funding .......................................................................................... 27
Substance Abuse and Mental Health Services Administration (SAMHSA) ................................. 29
Agency Overview.................................................................................................................... 29
Recent Trends in Agency Funding .......................................................................................... 30

Tables
Table 1. PHS Evaluation Set-Aside Fund Assessments and Transfers ............................................ 4
Table 2. Sequestration of Funding for PHS Agency Programs ....................................................... 8
Table 3. Nondefense Discretionary Spending Limits ...................................................................... 9
Table 4. Agency for Healthcare Research and Quality (AHRQ) ................................................... 12

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Table 5. Centers for Disease Control and Prevention (CDC) and Agency for Toxic
Substances and Disease Registry (ATSDR) ............................................................................... 14
Table 6. Food and Drug Administration (FDA) ............................................................................ 18
Table 7. Health Resources and Services Administration (HRSA) ................................................. 22
Table 8. Indian Health Service (IHS) ............................................................................................ 25
Table 9. National Institutes of Health (NIH) ................................................................................. 28
Table 10. Substance Abuse and Mental Health Services Administration (SAMHSA) .................. 30
Table A-1. Community Health Center Fund, FY2011-FY2017 .................................................... 33
Table B-1. PPHF Transfers to HHS Agencies ............................................................................... 35
Table C-1. Distribution of PCORTF Funding ............................................................................... 36
Table D-1. FDA User Fee Authorizations and Revenue ................................................................ 37

Appendixes
Appendix A. Community Health Center Fund .............................................................................. 33
Appendix B. Prevention and Public Health Fund (PPHF) ............................................................ 34
Appendix C. Patient-Centered Outcomes Research Trust Fund.................................................... 36
Appendix D. FDA User Fee Authorizations .................................................................................. 37

Contacts
Author Contact Information .......................................................................................................... 38

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Introduction to the PHS Agencies
The Department of Health and Human Services (HHS) has designated 8 of its 11 operating
divisions (agencies) as components of the U.S. Public Health Service (PHS). The PHS agencies
are (1) the Agency for Healthcare Research and Quality (AHRQ), (2) the Agency for Toxic
Substances and Disease Registry (ATSDR), (3) the Centers for Disease Control and Prevention
(CDC), (4) the Food and Drug Administration (FDA), (5) the Health Resources and Services
Administration (HRSA), (6) the Indian Health Service (IHS), (7) the National Institutes of Health
(NIH), and (8) the Substance Abuse and Mental Health Services Administration (SAMHSA).1
While the PHS agencies all provide and support essential public health services, their specific
missions vary. With the exception of FDA, the agencies have limited regulatory responsibilities.
Two of them—NIH and AHRQ—are primarily research agencies. NIH conducts and supports
basic, clinical, and translational medical research. AHRQ conducts and supports research on the
quality and effectiveness of health care services and systems.
Three of the agencies—IHS, HRSA, and SAMHSA—provide health care services or help support
systems that deliver such services. IHS supports a health care delivery system for American
Indians and Alaska Natives. Health services are provided directly by the IHS, as well as through
tribally contracted and operated health programs, and through services purchased from private
providers. HRSA funds programs and systems to improve access to health care among lowincome populations, pregnant women and children, persons living with HIV/AIDS, rural and
frontier populations, and others who are medically underserved. SAMHSA funds communitybased mental health and substance abuse prevention and treatment services.
CDC is a public health agency that develops and supports community-based and population-wide
programs and systems to promote quality of life and prevent the leading causes of disease, injury,
disability, and death. ATSDR, which is headed by the CDC director and included in the discussion
of CDC in this report, is tasked with identifying potential public health effects from exposure to
hazardous substances. Finally, FDA is primarily a regulatory agency, whose mission is to ensure
the safety of foods, dietary supplements, and cosmetics, and the safety and effectiveness of drugs,
vaccines, medical devices, and other health products. In 2009, Congress gave FDA the authority
to regulate the manufacture, marketing, and distribution of tobacco products in order to protect
public health.
The programs and activities of five of the PHS agencies—AHRQ, CDC, HRSA, NIH, and
SAMHSA—are mostly authorized under the Public Health Service Act (PHSA).2 While some of
FDA’s regulatory activities are also authorized under the PHSA, the agency and its programs
derive most of their statutory authority from the Federal Food, Drug, and Cosmetic Act
(FFDCA).3 HRSA’s maternal and child health programs are authorized by the Social Security Act
1

HHS also includes three human services agencies that are not part of the Public Health Service: (1) the Administration
for Children and Families (ACF); (2) the Administration for Community Living (ACL), which was created in April
2012 by consolidating the Administration on Aging (AoA), the HHS Office on Disability, and ACF’s Administration
on Developmental Disability; and (3) the Centers for Medicare & Medicaid Services (CMS). Departmental leadership
is provided by the Office of the Secretary (OS), which is comprised of various staff divisions including the Assistant
Secretary for Preparedness and Response (ASPR), the Assistant Secretary for Health (ASH), the Office of the Surgeon
General, the Office for Civil Rights (OCR), the Office of Inspector General (OIG), and the Office of the National
Coordinator for Health Information Technology (ONC). For more information on HHS and links to the PHS agency
websites, see http://www.hhs.gov/.
2
42 U.S.C. §§201 et seq.
3
21 U.S.C. §§301 et seq.

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Public Health Service Agencies: Overview and Funding (FY2015-FY2017)

(SSA),4 and many of the IHS programs and services are authorized by the Indian Health Care
Improvement Act.5 ATSDR was created by the Comprehensive Environmental Response,
Compensation and Liability Act (CERCLA, the “Superfund” law).6

Sources of PHS Agency Funding
The primary source of funding for each PHS agency is the discretionary budget authority it
receives through the annual appropriations process.7 AHRQ, CDC, HRSA, NIH, and SAMHSA
are funded by the Departments of Labor, Health and Human Services, and Education, and Related
Agencies (LHHS) appropriations act. Funding for ATSDR and IHS is provided by the Department
of the Interior, Environment, and Related Agencies (Interior/Environment) appropriations act.
FDA gets its funding through the Agriculture, Rural Development, Food and Drug
Administration, and Related Agencies (Agriculture) appropriations act.8

Secretary’s Transfer Authority
The annual LHHS appropriations act gives the HHS Secretary limited authority to transfer funds
from one budget account to another within the department. The Secretary may transfer up to 1%
of the funds in any given account. However, a recipient account may not be increased by more
than 3%. Congressional appropriators must be notified in advance of any transfer.9
The HHS Secretary used this transfer authority in FY2013 and again in FY2014 as part of a
broader effort to provide the Centers for Medicare & Medicaid Services (CMS) with additional
funding to implement the Affordable Care Act (ACA).10 In FY2013, for example, NIH was the
primary source of transfers both to CMS for ACA implementation and to CDC and SAMHSA to
help offset a loss of funding for those two agencies from the ACA’s Prevention and Public Health
Fund (PPHF, discussed below). A significant portion of the FY2013 PPHF funds that were
originally allocated to CDC and SAMHSA were reallocated to CMS, also for ACA
implementation. In FY2014, NIH was again the primary source of transfers to CMS to support
ACA implementation.11

4

SSA Title V, 42 U.S.C. §§701 et seq.
25 U.S.C. §§1601 et seq.
6
42 U.S.C. §9604(i).
7
Budget authority is the authority provided in federal law to incur financial obligations that will result in expenditures,
or outlays, of federal funds. Such obligations include contracts for the purchase of supplies and services, liabilities for
salaries and wages, and grant awards. Appropriations are the most common form of budget authority. Discretionary
budget authority represents funding that is provided in and controlled by the annual appropriations acts.
8
For an overview of each of these three appropriations acts, see CRS Report R44287, Labor, Health and Human
Services, and Education: FY2016 Appropriations; CRS Report R44061, Interior, Environment, and Related Agencies:
FY2016 Appropriations; and CRS Report R44240, Agriculture and Related Agencies: FY2016 Appropriations.
9
The HHS Secretary’s FY2016 transfer authority was provided in Section 205 of the FY2016 LHHS appropriations act
(P.L. 114-113, Division H).
10
The ACA was signed into law on March 23, 2010 (P.L. 111-148, 124 Stat. 119). On March 30, 2010, the President
signed the Health Care and Education Reconciliation Act (HCERA; P.L. 111-152, 124 Stat. 1029), which included
several new health reform provisions and amended numerous provisions in the ACA. Several subsequently enacted
bills made additional changes to selected ACA provisions. All references to the ACA in this report refer collectively to
the law and to the changes made by HCERA and subsequent legislation.
11
For more discussion of ACA implementation funding, see CRS Report R43066, Federal Funding for Health
Insurance Exchanges.
5

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PHS Evaluation Set-Aside
In addition to the transfer authority provided in the annual LHHS appropriations act, Section 241
of the PHSA authorizes the HHS Secretary, with the approval of congressional appropriators, to
use a portion of the funds appropriated for programs authorized by the PHSA to evaluate their
implementation and effectiveness.12 This long-standing budgeting authority is known as the
Public Health Service Evaluation Set-Aside (set-aside), or PHS budget “tap.”
Under this authority the appropriations of numerous HHS programs are subject to an assessment.
Although the PHSA limits the set-aside to no more than 1% of program appropriations, in recent
years the annual LHHS appropriations act has specified a higher amount. The FY2016 LHHS
appropriations act capped the set-aside at 2.5%, the same percentage that has been in place since
FY2010.13
Following passage of the annual LHHS appropriations act, the HHS Budget Office calculates the
assessment on each of the donor agencies and offices. These funds are then transferred to various
recipient agencies and offices within the department for evaluation and other specified purposes,
based on the amounts specified in the appropriations act.14
Table 1 shows the total assessments and transfers for FY2013, by HHS agency and office, and
indicates whether the entity was a net donor or recipient of set-aside funds that year. These
figures are broadly representative of the distribution of set-aside funds that occurred each fiscal
year over a period of several years prior to FY2015, when the appropriators decided to make
major changes to the allocation of such funds.
NIH, whose annual discretionary appropriation exceeds that of all the other PHS agencies
combined, is subject to the largest assessment of set-aside funds. NIH contributed almost $710
million (69%) of the $1.026 billion in set-aside funds in FY2013. However, the agency received
$8 million in set-aside funding, making it a significant net donor of set-aside funds. Similarly,
HRSA contributed more set-aside funds than it received in FY2013. On the other hand, AHRQ,
CDC, and SAMHSA were net recipients of set-aside funding in FY2013. The Administration for
Children and Families (ACF) and various offices within the Office of the Secretary (OS) also
received set-aside funds.
Table 1 also shows the set-aside assessments and transfers for the current fiscal year (i.e.,
FY2016). These figures reflect the significant changes that the appropriators first made in
FY2015 by returning most of the set-aside funding to NIH and eliminating any transfers to
AHRQ, CDC, and HRSA. As a result, NIH has gone from being by far the largest net donor of

12

Since FY2014, annual appropriations acts have included a provision instructing the HHS Secretary to use the PHS
set-aside funds for the “evaluation ... and the implementation and effectiveness” of programs funded in the HHS title of
the LHHS appropriations act. Previously such provisions had restricted tap funds to the “evaluation ... of the
implementation and effectiveness” of programs authorized under the PHSA [emphasis added]. The current provision
can be found in P.L. 114-113, Division H, Section 205.
13
P.L. 114-113, Division H, Section 204.
14
Only funds appropriated for activities and programs authorized by the PHSA are subject to an assessment. Thus,
most of the funds appropriated for CDC, HRSA, NIH, and SAMHSA are assessed. The annual LHHS appropriations
act excludes some funding from the set-aside; still other funding is excluded by convention. For example, funds
appropriated for HHS block grants targeting prevention, substance abuse, and mental health as well as funds for
program management activities and for buildings and facilities are typically excluded from the set-aside. Funding for
agencies (e.g., ATSDR, FDA, IHS) and programs (e.g., HRSA’s maternal and child health block grant) that are not
authorized by the PHSA are also excluded.

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set-aside funds to a net recipient of such funding. Meanwhile, AHRQ and CDC have experienced
a significant loss of set-aside funding and are now both net donors of these funds.
Table 1. PHS Evaluation Set-Aside Fund Assessments and Transfers
Dollars in Thousands
FY2013
Agency/
Office

Total
Assessments

NIH

FY2016

Total
Transfers

Net Gain
(Loss)

Total
Assessments

Total
Transfers

Net Gain
(Loss)

709,536

8,200

(701,336)

733,198

780,000

46,802

HRSA

126,340

25,000

(101,340)

209,399

—

(209,399)

CDC

116,170

375,048

258,878

156,003

—

(156,003)

SAMHSA

53,867

129,667

75,800

29,661

133,667

104,006

AHRQ

78

365,362

365,284

6,555

—

(6,555)

CMS

—

—

—

—

184,000

184,000

ACF

—

5,762

5762

—

—

—

ACL

158

—

(158)

898

—

(898)

OS

19,412

116,522

97,110

29,281

67,328

38,047

Total

1,025,561

1,025,561

1,164,995

1,164,995

Sources: Department of Health and Human Services, “Use of Public Health Service Set-Aside Authority for
Fiscal Year 2013,” Report to Congress; and Department of Health and Human Services, “Use of Public Health
Services Set-Aside Authority for Fiscal Year 2016,” Report to Congress.
Notes: NIH = National Institutes of Health; HRSA = Health Resources and Services Administration; CDC =
Centers for Disease Control and Prevention; SAMHSA = Substance Abuse and Mental Health Services
Administration; AHRQ = Agency for Healthcare Research and Quality; CMS = Centers for Medicare and
Medicaid Services; ACF = Administration for Children and Families; ACL = Administration for Community
Living; OS = Office of the Secretary.

The situation with AHRQ is of particular interest to many. From FY2003 through FY2014,
AHRQ did not receive an annual discretionary appropriation. The agency was supported by setaside funds and, in recent years, by amounts from other sources. In FY2015, however, AHRQ
received a discretionary appropriation for the first time in more than a decade in lieu of receiving
any set-aside funding. That continues to be the case in FY2016.15

Mandatory Funding, User Fees, and Collections
Although the bulk of PHS agency funding is provided through annual discretionary
appropriations, agencies also receive mandatory funding, user fees, and third-party collections. As
discussed below, these additional sources of funding are a substantial component of the budget of
several PHS agencies.

15

For more information see CRS Report R44136, The Agency for Healthcare Research and Quality (AHRQ) Budget:
Fact Sheet.

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Mandatory Appropriations
The ACA included numerous appropriations that together provided billions of dollars in
mandatory spending16 to support specified grant programs and activities within HHS.17 A few
PHS agencies continue to receive these funds, which are itemized in the funding tables in this
report.
The ACA also established and funded three multibillion dollar trust funds to help support PHS
agency programs and activities. First, the ACA provided a total of $11 billion in annual
appropriations over the five-year period FY2011-FY2015 to the Community Health Center
Fund (CHCF).18 These funds help support the federal health centers program and the National
Health Service Corps (NHSC), both of which are administered by HRSA. The Medicare Access
and CHIP Reauthorization Act of 2015 (MACRA)19 appropriated two more years of funding for
the CHCF; a total of $3.910 billion for each of FY2016 and FY2017. A table summarizing each
fiscal year’s CHCF appropriation and the allocation of funds appears in Appendix A.
Second, the Prevention and Public Health Fund (PPHF), for which the ACA provided a
permanent annual appropriation, is intended to support prevention, wellness, and other public
health programs and activities.20 To date, CDC has received the majority of PPHF funds, while
AHRQ, HRSA, and SAMHSA have received smaller amounts. The HHS Secretary transferred
almost half of the FY2013 PPHF funds to CMS to support ACA implementation. A table showing
the allocation of annual PPHF funding by agency since FY2010 is provided in Appendix B.
Finally, the Patient-Centered Outcomes Research Trust Fund (PCORTF) is supporting
comparative effectiveness research over a 10-year period (FY2010-FY2019) with a mix of
appropriations—some of which are offset by revenue from a fee imposed on health insurance
policies and self-insured health plans—and transfers from the Medicare Part A and Part B trust
funds.21 A portion of the PCORTF is allocated for AHRQ. More information on the PCORTF,
including the appropriation and transfer formulas, is provided in Appendix C.
In addition to the ACA funding, HRSA, CDC, and IHS each receive mandatory funds from other
sources. HRSA’s Family-to-Family Health Information Centers Program has been funded by a
series of mandatory appropriations since FY2007; CDC receives Medicaid funding to support the
Vaccines for Children program; and both IHS and NIH receive mandatory funds for diabetes
programs. These and other mandatory appropriations are itemized in the agency funding tables in
this report.

User Fees
Several PHS agencies assess user fees on third parties to help fund their programs and activities.
User fees collected by CDC, HRSA, and SAMHSA represent a very small portion of each
agency’s overall budget.22 In comparison, the industry user fees that FDA collects help finance a
16

Mandatory spending, also known as direct spending, refers to outlays from budget authority that is provided in laws
other than annual appropriations acts. Mandatory spending includes spending on entitlement programs.
17
For a complete list and discussion of all the appropriations in the ACA, including details of the obligation of these
funds, see CRS Report R41301, Appropriations and Fund Transfers in the Affordable Care Act (ACA).
18
ACA Section 10503(a)-(b).
19
P.L. 114-10, 129 Stat. 87.
20
ACA Section 4002, as amended; 42 U.S.C. §300u-11.
21
ACA Section 6301(d)-(e).
22
These user fees are listed in the agency-specific tables in this report.

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broad range of the agency’s regulatory activities and account for a substantial and growing share
of the agency’s budget.
In 1992, the Prescription Drug User Fee Act (PDUFA)23 established the first user fee program at
FDA. Since PDUFA’s enactment, Congress has created several other FDA user fee programs.
These programs provide FDA with additional resources that allow it to hire more personnel and
expedite the process of reviewing new product applications. Some user fees also pay for
information technology infrastructure and postmarket surveillance of FDA-approved products.
FDA’s user fee programs now support the agency’s regulation of prescription drugs, animal drugs,
medical devices, tobacco products, and some foods, among other activities. The amount of user
fees that FDA collects under these programs has increased steadily since PDUFA was enacted,
both in absolute terms and as a share of FDA’s overall budget. In FY2016, user fees account for
43% of the agency’s funding. More discussion of user fees is provided in the FDA section of this
report and in Appendix D.

Collections
IHS supplements its annual discretionary appropriation with third-party collections from public
and private payers. Most of these funds come from Medicare and Medicaid, which reimburse IHS
for services provided to American Indians and Alaska Natives enrolled in these programs at
facilities operated by IHS and the tribes. IHS also collects reimbursements from private health
insurers. IHS collections (and reimbursements) are reflected in Table 8 of this report.

Recent Trends in PHS Agency Funding
Congress has taken a number of recent steps through both the annual appropriations process and
the enactment of deficit-reduction legislation to reduce the growth in federal spending. These
actions, which are briefly discussed below, have had an impact on the level of discretionary
funding for several PHS agencies since FY2010.
Among the five PHS agencies that are funded through the LHHS appropriations act, AHRQ has
witnessed a reduction in discretionary funding over the past six years. However, that reduction
has been offset by the receipt of increasing amounts of mandatory funding. Discretionary funding
for the other four agencies—CDC, HRSA, NIH, and SAMHSA—has fluctuated in recent years,
dipping in FY2013 as a result of the sequestration of discretionary appropriations that fiscal year
(see below). Both CDC and HRSA also have received increasing amounts of mandatory funding
since FY2010, which has raised each agency’s overall funding level.
FDA and IHS, which receive their discretionary funding through the Agriculture and the
Interior/Environment appropriations acts, respectively, have seen their appropriations increase
since FY2010. Both agencies also have witnessed a steady increase in funding from other
sources; user fees at FDA, and third-party collections at IHS.

Impact of Budget Caps and Sequestration
In April 2011, lawmakers agreed to cuts in discretionary spending for a broad range of agencies
and programs as part of negotiations to complete the FY2011 appropriations process and avert a
government shutdown. Four months later, as part of negotiations to raise the debt ceiling,
23

P.L. 102-571, 106 Stat. 4491.

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Congress and the President then enacted the Budget Control Act of 2011 (BCA).24 The BCA
established enforceable discretionary spending limits, or caps, for defense and nondefense
spending for each of FY2012 through FY2021, and provided for further annual spending
reductions equally divided between the categories of defense and nondefense spending beginning
in FY2013. Within each spending category, those further reductions are allocated proportionately
to discretionary spending and mandatory spending, subject to certain exemptions and special
rules. All the spending summarized in this report falls within the nondefense category.
Under the BCA, the spending reductions are achieved through two different methods: (1)
sequestration (i.e., an across-the-board cancellation of budgetary resources), and (2) lowering the
BCA-imposed discretionary spending caps. The Office of Management and Budget (OMB) is
responsible for calculating the percentages and amounts by which mandatory and discretionary
spending are required to be reduced each year, and for applying the relevant exemptions and
special rules.

Mandatory Spending
The BCA requires the mandatory spending reductions to be executed each year through a
sequestration of all nonexempt accounts. Generally, the ACA and other mandatory funding
discussed in this report is fully sequestrable at the applicable percentage rate for nonexempt
nondefense mandatory spending (see Table 2), with the following key exceptions. First, the funds
for the CDC-administered Vaccines for Children program come from Medicaid, which is exempt
from sequestration. Second, CDC funding for the Energy Employees Occupational Illness
Compensation Program Act (EEOICPA) and the World Trade Center Health Program also are
exempt from sequestration. Third, under the sequestration special rules, cuts in CHCF funding for
community health centers and migrant health centers and the cuts in mandatory diabetes funding
for IHS are capped at 2% (see Table 2).
While all the nonexempt PHS programs with mandatory funding were sequestered in FY2013 and
FY2014, several of them avoided sequestration in FY2015 and/or FY2016 because they had no
budgetary resources in place at the time the sequester was ordered by the President. The
Maternal, Infant, and Early Childhood Home Visiting program, administered by HRSA, is one
example of a program for which this occurred. The ACA authorized the home visiting program
and funded it through FY2014 (see Table 7). Pursuant to the BCA, the President ordered the
FY2015 sequestration on March 10, 2014. Because Congress and the President had yet to enact
legislation extending funding for the home visiting program, there were no FY2015 budgetary
resources to sequester.25

24

P.L. 112-25, 125 Stat. 240. The BCA amended the Balance Budget and Emergency Deficit Control Act of 1985
(BBEDCA; P.L. 99-177; Title II, 99 Stat. 1038). For more information, see CRS Report R41965, The Budget Control
Act of 2011.
25
While a full accounting of this anomaly is beyond the scope of this report, the following programs listed in the tables
in the report were not sequestered in the years indicated in parentheses because there were no mandatory budgetary
resources at the time the sequestration was ordered: (1) CHCF – health centers, NHSC (FY2016); (2) Maternal, Infant,
and Early Childhood Home Visiting program (FY2015, FY2016); (3) Family-to-Family Information Centers (FY2014,
FY2015, FY2016); and (4) IHS and NIH mandatory diabetes funding (FY2015, FY2016).

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Table 2. Sequestration of Funding for PHS Agency Programs
FY2013-FY2017
Percent Reduction
Program

FY2013

FY2014

FY2015

FY2016

FY2017

Nonexempt programs

5.1%a

7.2%

7.3%

6.8%

6.9%

Community & migrant health centers, IHS

2.0%

2.0%

2.0%

2.0%

2.0%

5.0%a

NAb

NAb

NAb

NAb

Mandatory Spending

Discretionary Spending
Nonexempt programs

Sources: OMB Report to the Congress on the Joint Committee Sequestration for Fiscal Year 2013, March 1,
2013; OMB Report to the Congress on the Joint Committee Reductions for Fiscal Year 2014, May 20, 2013;
OMB Report to the Congress on the Joint Committee Reductions for Fiscal Year 2015, March 10, 2014; OMB
Report to the Congress on the Joint Committee Reductions for Fiscal Year 2016, February 2, 2015; and OMB
Report to the Congress on the Joint Committee Reductions for Fiscal Year 2017, February 9, 2016.
a. These percentages reflect adjustments made by the American Taxpayer Relief Act of 2012 (ATRA; P.L. 112240), which amended the BCA by reducing the overall dollar amount that needed to be cut from FY2013
spending.
b. NA = not applicable.

Discretionary Spending
Under the BCA, FY2013 discretionary spending was also reduced through sequestration.
However, for each of the remaining fiscal years (i.e., FY2014 through FY2021), the annual
reductions in discretionary spending required under the BCA are to be achieved by lowering the
discretionary spending caps by the total dollar amount of the required reduction. This means that
the cuts within the lowered spending cap may be apportioned through the annual appropriations
decisionmaking, rather than via an across-the-board reduction through sequestration.

FY2013 Sequestration
In general, PHS agency discretionary appropriations in FY2013 were fully sequestrable at the
applicable percentage rate for nonexempt nondefense discretionary spending (see Table 2). As a
result, each agency saw a dip in its discretionary funding for FY2013. OMB determined that FDA
user fees for FY2013 were fully sequestrable, but concluded that IHS’s third-party collections in
FY2013 were exempt from sequestration.

FY2014-FY2017 Discretionary Spending Caps
Table 3 shows the original nondefense discretionary (NDD) spending caps for FY2014-FY2017
established by the BCA. For each of those four fiscal years, the BCA required the caps to be
lowered by approximately $37 billion to achieve the necessary reduction in NDD spending.
However, the Bipartisan Budget Act of 2013 (BBA13)26 amended the BCA by establishing new
levels for the FY2014 and FY2015 NDD spending caps, and eliminating the requirement for
those caps to be reduced. While the BBA13 caps were set at a level that was lower than the
original BCA caps (see Table 3), they were higher than the BCA-lowered caps that they replaced.
26

P.L. 113-67, Division A; 127 Stat. 1165.

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The Bipartisan Budget Act of 2015 (BBA15)27 further amended the BCA by establishing new
levels for the FY2014 and FY2015 NDD spending caps, and eliminating the requirement for
those caps to be lowered. Once again, the BBA15 caps were set at a level that is below the
original BCA caps for those two fiscal years (see Table 3), but is higher than the BCA-lowered
caps that they replace.
The revised NDD caps allowed an additional $26 billion for nondefense programs in FY2016
compared to the previous fiscal year. However, there is virtually no increase in NDD
appropriations allowed by the FY2017 revised cap level. (The revised cap for FY2017 is only $40
million above the revised cap for FY2016.)
Table 3. Nondefense Discretionary Spending Limits
Billions of Dollars
FY2014

FY2015

FY2016

FY2017

Original caps under BCA

510.000

520.000

530.000

541.000

Revised caps under BBA13 and BBA15

491.773

492.356

518.491

518.531

Source: Budget Control Act of 2011 (P.L. 112-25); Bipartisan Budget Act of 2013 (P.L. 113-67, Division A);
Bipartisan Budget Act of 2015 (P.L. 114-74).

Mandatory Funding Proposals for FY2017
The President’s FY2017 budget includes a total of $2.940 billion in proposed new mandatory
funding for the PHS agencies: $1.825 billion for NIH; $590 million for SAMHSA; $495 million
for HRSA; and $30 million for CDC. These amounts, which are discussed later in this report,
would be used to supplement—and in one case replace—discretionary funding for existing
programs, or provide funding for new initiatives. It will be up to Congress to decide whether to
pass legislation to provide these funds.
The use of mandatory funding, including amounts provided by the ACA, has become an
important component of PHS agency budgeting in recent years. Mandatory funds are not
controlled by the annual appropriations process and do not count toward the discretionary
spending caps.

Report Roadmap
The remainder of this report consists of seven sections, one for each PHS agency beginning with
AHRQ.28 Each section includes an overview of the agency’s statutory authority and principal
activities, and a brief summary of recent trends in the agency’s funding. This material is
accompanied by a detailed funding table showing the agency’s FY2015 and FY2016 funding
levels and the FY2017 budget request. The amounts in the funding tables in this report are taken
from the departmental and agency budget documents submitted to the appropriations committees,
as well as agency operating plans.29

27

P.L. 114-74, 129 Stat. 584.
ATSDR and its budget are included in the discussion of CDC.
29
All the budget documents and operating plans are available at http://www.hhs.gov/budget/.
28

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The funding tables show the post-sequestration amounts for the accounts that were subject to
sequestration in FY2015 and FY2016. The amounts shown for the FY2017 request do not reflect
sequestration.
The funding tables are formatted in a similar, though not identical, manner. The formatting
generally matches the way in which each agency’s funding is presented in the congressional
budget documents. Each table shows the funding for all the agency’s budget accounts and,
typically, for selected programs and activities within those accounts. These amounts are summed
to give the agency’s total, or program level, funding. At the bottom of the table any user fees, setaside funds, ACA funds, and other nondiscretionary amounts are subtracted from the program
level to give the agency’s discretionary budget authority (i.e., annual discretionary
appropriations).
The tables for AHRQ, CDC, HRSA, and SAMHSA include non-add entries—italicized and in
parentheses—to indicate the contribution of funding to specific accounts from sources other than
the agency’s discretionary appropriations. Almost all of the CDC accounts, for example, are
funded with discretionary appropriations plus amounts from other sources (see Table 5).
The use of a dash in the funding tables generally means “not applicable.” Either the activity or
program was not authorized or there was no mandatory funding provided for that fiscal year. In
contrast, a zero usually indicates that congressional appropriators had chosen not to appropriate
any discretionary funds that year or, in the case of the FY2017 budget request, that no
discretionary funding was requested.
It is important to keep in mind that the PHS agency funding tables that appear in budget
documents and appropriations committee reports, as well as the tables in this report, show only
the amount of evaluation set-aside funds received. They do not reflect the amount of funding
assessed on agency accounts. As a result, the funding tables for the PHS agencies subject to an
assessment give a somewhat distorted view of their available budgetary resources. This effect is
particularly significant in the case of the three agencies—CDC, HRSA, and NIH—that are
subject to a significant assessment under the evaluation set-aside authority (see Table 1). NIH, for
example, is assessed approximately $700 million annually. While the funding table for NIH
shows the transfer (i.e., receipt) of set-aside funds, which count toward the agency’s overall
program level funding, the amounts shown for each agency account have not been reduced to
reflect the assessment. Thus, NIH appears to have about $700 million more than is in fact the
case.
This report is a new edition of an earlier product, which remains available: CRS Report R43304,
Public Health Service Agencies: Overview and Funding (FY2010-FY2016).

Agency for Healthcare Research and Quality
(AHRQ)30
Agency Overview
AHRQ supports research designed to improve the quality of health care, increase the efficiency of
its delivery, and broaden access to health services.31 Specific research efforts are aimed at
30
31

This section was written by (name reda cted), Specialist in Health Policy.
See the AHRQ website at http://www.ahrq.gov.

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reducing the costs of care, promoting patient safety, measuring the quality of health care, and
improving health care services, organization, and financing. AHRQ is required to disseminate its
research findings to health care providers, payers, and consumers, among others. In addition, the
agency collects data on health care expenditures and utilization through the Medical Expenditure
Panel Survey (MEPS) and the Healthcare Cost and Utilization Project (HCUP).
AHRQ has evolved from a succession of
agencies concerned with fostering health
For more information
services research and health care technology
CRS Report R44136, The Agency for Healthcare Research
and Quality (AHRQ) Budget: Fact Sheet.
assessment. The Omnibus Budget
Reconciliation Act of 1989 (P.L. 101-239)
added a new PHSA Title IX and established the Agency for Health Care Policy and Research
(AHCPR), a successor agency to the former National Center for Health Services Research and
Health Care Technology Assessment (NCHSR). AHCPR was reauthorized in 1992 (P.L. 102410). On December 6, 1999, President Clinton signed the Healthcare Research and Quality Act of
1999 (P.L. 106-129), which renamed AHCPR as the Agency for Healthcare Research and Quality
(AHRQ) and reauthorized appropriations for its programs and activities through FY2005.
Congress has yet to reauthorize the agency’s funding. Despite the expired authorization of
appropriations, AHRQ continues to get annual funding.
The AHRQ budget is organized according to three program areas: (1) Healthcare Costs, Quality,
and Outcomes (HCQO) Research; (2) MEPS; and (3) program support. HCQO research currently
focuses on four priority areas, summarized in the text box below.
From FY2003 through FY2014, AHRQ did not receive its own annual discretionary
appropriation. Instead, the agency largely relied on the PHS evaluation set-aside to fund its
activities and programs. In recent years AHRQ also has received mandatory funds from the PPHF
and the PCORTF (see Appendix B and Appendix C). In FY2015, AHRQ received its own
discretionary appropriation for the first time in more than a decade in lieu of any set-aside
funding.32 This trend continued in FY2016 with the agency receiving its own discretionary
appropriation and no set-aside funds.
Health Costs, Quality, and Outcomes (HCQO) Research Areas
Health Information Technology (HIT) Research. Research evaluating HIT and its impact on the quality and
efficiency of health care.
Patient Safety. Research on reducing and preventing medical errors, with a focus on health care-associated
infections (HAIs).
Health Services Research, Data, and Dissemination. Research on quality of health care that spans multiple
priority areas including, for example, the annual National Healthcare Quality and National Healthcare Disparities
Reports.
U.S. Preventive Services Task Force (USPSTF). AHRQ provides the USPSTF with scientific, administrative,
and other types of support, although the Task Force is an independent panel of national experts.
Source: CRS Analysis and the FY2017 HHS Budget in Brief. http://www.hhs.gov/about/budget/fy2017/budget-in-brief/
ahrq/index.html.

32

FY2009 was the one exception. AHRQ received a supplemental discretionary appropriation that year from the
American Recovery and Reinvestment Act of 2009 (P.L. 111-5).

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Recent Trends in Agency Funding
Since FY2010, AHRQ’s budget has increased from $403 million to $428 million (+$25 million),
with transfers from PCORTF growing from $8 million in FY2011 to $94 million in FY2016.
Discretionary sources of funding shifted from set-aside transfers to the agency’s own
discretionary appropriation in both FY2015 and FY2016, and ACA mandatory funds have been a
prominent and increasing source of funding for the agency since FY2010. AHRQ’s program level
had been increasing steadily between FY2011 and FY2015, with decreases in discretionary
funding being more than offset by transfers of PCORTF funds. However, in FY2016, the total
program level for the agency decreased for the first time since FY2011, despite an increasing
PCORTF transfer (see Table 4).
Table 4. Agency for Healthcare Research and Quality (AHRQ)
(Millions of Dollars, by Fiscal Year)
2015

2016

2017
Request

229

197

224

Health Information Technology Research

28

22

23

Patient Safety

77

74

76

Health Services Research, Data, and Disseminationa

112

89

113

PHS Evaluation Set-Aside (non-add)

(0)

(0)

(83)

Prevention/Care Management (USPSTF)

12

12

12

MEPS

65

66

69

Program Support

70

71

71

PCORTF (Patient-Centered Health Research)b

79

94

106

Total, Program Level

443

428

470

PHS Evaluation Set-Aside

0

0

83

PCORTF Transfers

79

94

106

364

334

280

Program or Activity
HCQO Research

Less Funds From Other Sources

Total, Discretionary Budget Authority

Sources: Prepared by CRS based on AHRQ’s congressional budget justification documents and the HHS Budget
in Brief documents, available at http://www.hhs.gov/budget/.
Notes: Individual amounts may not add to subtotals or totals due to rounding.
a. Formerly “Crosscutting Activities”; also formerly “Research Innovations.”
b. AHRQ receives funds transferred from the PCORTF to carry out PHSA Section 937, which requires the
dissemination of the results of patient-centered outcomes research carried out by the Patient Centered
Outcomes Research Institute (PCORI) and other “government-funded research relevant to comparative
clinical effectiveness research.” For FY2011-FY2013, the PCORTF transfer supplemented the agency’s setaside funding for its patient-centered health research program. Since FY2014, however, AHRQ’s patientcentered health research program has been entirely funded by the PCORTF transfer, which is now shown
as its own separate budget line. AHRQ’s budget documents no longer list patient-centered health research
as a separate program area.

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Centers for Disease Control and Prevention (CDC)33
Agency Overview
CDC’s mission is “to protect America from health, safety and security threats, both foreign and in
the [United States].”34 CDC is organized into a number of centers, institutes, and offices, some
focused on specific public health challenges (e.g., chronic disease prevention, injury prevention),
and others focused on general public health capabilities (e.g., surveillance and laboratory
services).35 In addition, the Agency for Toxic Substances and Disease Registry (ATSDR) is
headed by the CDC Director and is discussed in this section.
Many CDC activities are not specifically authorized but are based in broad, permanent authorities
in the PHSA.36 Four CDC operating divisions are explicitly authorized. The National Institute for
Occupational Safety and Health (NIOSH) was permanently authorized by the Occupational
Safety and Health Act of 1970.37 The National Center on Birth Defects and Developmental
Disabilities (NCBDDD) was established in PHSA Section 317C by the Children’s Health Act of
2000.38 The National Center for Health Statistics (NCHS) was established in PHSA Section 306
by the Health Services Research, Health Statistics, and Medical Libraries Act of 1974.39 ATSDR
was established by the Comprehensive Environmental Response, Compensation and Liability Act
of 1980 (CERCLA, the “Superfund” law).40 Authorizations of appropriations for NCBDDD,
NCHS, and ATSDR have expired, but the programs continue to receive annual appropriations.
CDC provides about $5 billion per year in grants to state, local, municipal, tribal, and foreign
governments, and to academic and non-profit entities.41 It has few regulatory responsibilities.

Recent Trends in Agency Funding
Between FY2010 and FY2016, the total program level for CDC/ATSDR increased from $10.88
billion to $11.78 billion. During that time period, CDC/ATSDR budget authority decreased by 3%
from $6.5 billion in FY2010 to $6.3 billion in FY2016. Table 5 presents funding levels for CDC
programs for FY2015 through the FY2017 request. In addition to annual discretionary
appropriations, program level amounts for recent years include funds from the following four
mandatory appropriations: (1) the Vaccines for Children (VFC) program;42 (2) NIOSH activities
to support the Energy Employees Occupational Illness Compensation Program Act (EEOICPA);43
(3) the World Trade Center Health Program (WTCHP);44 and (4) appropriations provided under
33

This section was written by (name redacted), Specialist in Public Health and Epidemiology.
See the CDC website at http://www.cdc.gov/about/organization/mission.htm.
35
Information about CDC’s organization is available at http://www.cdc.gov/about/organization/cio.htm.
36
For example, PHSA Section 301 authorizes the Secretary of HHS to conduct research and investigations as necessary
to control disease, and Section 317 authorizes the Secretary to award grants to states for preventive health programs.
37
29 U.S.C. §671.
38
42 U.S.C. §247b-4.
39
42 U.S.C. §242k.
40
42 U.S.C. §9604(i).
41
See CDC, Procurements and Grants, http://www.cdc.gov/about/business/funding.htm.
42
See CDC, Vaccines for Children Program, http://www.cdc.gov/vaccines/programs/vfc/index.html.
43
See CDC, EEOICPA, “Frequently Asked Questions,” http://www.cdc.gov/niosh/ocas/faqsact.html.
44
See CDC, World Trade Center Health Program, http://www.cdc.gov/wtc/index.html.
34

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ACA, principally through the PPHF.45 CDC receives a small amount of funds from authorized
user fees, and may also receive funds through the PHS set-aside, supplemental appropriations,
and other transfers.
When considering funding trends for CDC/ATSDR, it is useful to consider mandatory and
discretionary funds separately. For example, for FY2016, the CDC/ATSDR total operating
budget, or program level, is $11.78 billion. Of this amount,






$6.27 billion (53%) is composed of discretionary funds (i.e., budget authority)
for CDC provided in the LHHS appropriations act;
$5.42 billion (46%) is composed of mandatory funds for CDC and ATSDR
programs, namely the VCF, EEOICPA, and WTCHP, and from the ACA
(principally from the PPHF);
$75 million (<1%) is discretionary funds for ATSDR provided in the
Interior/Environment appropriations act; and
$17 million (<1%) is from authorized user fees and other transfers.

Many of CDC’s PPHF-funded activities also receive discretionary appropriations. Exceptions
include the Preventive Health and Health Services Block Grant, and the Lead Poisoning
Prevention Program, which were funded solely through PPHF distributions for FY2016.46 For
more discussion on the allocation of annual PPHF funding, see Appendix B.
In December 2014 Congress provided $1.771 billion in FY2015 emergency supplemental
appropriations to CDC for response to the Ebola outbreak. The funds, which are available through
FY2019, are to be used for both domestic and international activities. CDC has not presented
these funds within its general budget, and they are not presented in Table 5.47 However, the table
does include $30 million provided to CDC’s Global Health Program from an earlier Ebola
supplemental.
Table 5. Centers for Disease Control and Prevention (CDC) and
Agency for Toxic Substances and Disease Registry (ATSDR)
(Millions of Dollars, by Fiscal Year)
2015

2016

2017
Request

798

798

748

PPHF Transfer (non-add)

(210)

(324)

(336)

PHSSEF Influenza Transfers (non-add)

(15)

(15)

0

Vaccines for Childrena

3,851

4,161

4,387

HIV/AIDS, Viral Hepatitis, STI and TB

1,118

1,122

1,127

405

580

629

Program or Activity
Immunization and Respiratory Diseases

Emerging & Zoonotic Infectious Diseases

45

CRS Report R41301, Appropriations and Fund Transfers in the Affordable Care Act (ACA). See more information
about the PPHF in Appendix B of this report.
46
Budget details are available in CDC, “FY 2017 CDC Budget Overview,” table on pp. 10-12, February, 2016,
http://www.cdc.gov/budget/fy2017/congressional-justification.html.
47
CDC, “FY 2015–2019 Ebola Response Funding,” http://www.cdc.gov/budget/ebola/index.html. See also CRS
Report R44460, Zika Response Funding: In Brief.

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Program or Activity
PPHF Transfer (non-add)
Chronic Disease Prevention and Health Promotion
PPHF Transfer (non-add)

2015

2016

2017
Request

(52)

(52)

(52)

1,199

1,177

1,117

(452)

(339)

(437)

ACA Childhood Obesity Demonstrationb

—

10

—

Birth Defects, Developmental Disabilities, Disability and Health

132

136

136

(0)

(0)

(68)

179

182

182

PPHF Transfer (non-add)

(13)

(17)

(14)

Injury Prevention and Control

170

236

299

—

—

(30)c

Public Health Scientific Services

481

492

501

PPHF Transfer (non-add)

(0)

(0)

(36)

Occupational Safety and Health

335

339

286

(0)

(0)

(72)

447

427

442

(30)d

—

—

Public Health Preparedness and Response

1,353

1,405

1,402

Crosscutting Activities and Program Support

274

274

114

PPHF Transfer (non-add)e

(160)

(160)

(0)

Prevention Block Grant (non-add)e

(160)

(160)

(0)

Buildings and Facilities

10

10

31

User Fees

2

2

2

Energy Employees Occupational Illness Compensation Program Act
(EEOICPA)

50

55

55

World Trade Center Health Programf

261

300

335

Agency for Toxic Substances and Disease Registry (ATSDR)

75

75

75

ACA Medical Monitoring (ATSDR)g

19

—

—

11,158

11,781

11,868

3,851

4,161

4,387

EEOICPA

50

55

55

PHSSEF Transfers

15

15

0

PHS Evaluation Set-Aside

0

0

72

ACA Mandatory Funds: PPHF Transfers

887

892

944

Other Mandatory Funds

19

10

—

World Trade Center Health Program

261

300

335

2

2

2

PPHF Transfer (non-add)
Environmental Health

Mental Health (New mandatory proposal, non-add)c

PHS Evaluation Set-Aside (non-add)
Global Health
Supplemental Appropriations for Ebola response (non-add)d

Total, CDC/ATSDR Program Level
Less Funds From Other Sources
Vaccines for Childrena

User Fees

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Program or Activity
Proposed New Mandatory Funds
Total, CDC/ATSDR Discretionary BA
Less ATSDR Discretionary BA
Total, CDC Discretionary BA

2015

2016

2017
Request

—

—

30

6,073

6,346

6,043

75

75

75

5,998

6,271

5,967

Sources: CDC and ATSDR congressional budget justifications and related documents for FY2016 and FY2017,
http://www.cdc.gov/fmo.
Notes: Individual amounts may not add to subtotals or totals due to rounding.
Amounts in this table do not include emergency supplemental Ebola response funding for FY2015-FY2019
provided in P.L. 113-235. These funds are discussed in CRS Report R44460, Zika Response Funding: In Brief; and at
CDC, “FY 2015–2019 Ebola Response Funding,” http://www.cdc.gov/budget/ebola/index.html.
PHSSEF is Public Health and Social Services Emergency Fund, a fund used by appropriators to provide the
Secretary with ongoing or one-time emergency funding, such as for the response to influenza epidemics. STI is
sexually transmitted infection.
a. The Vaccines for Children (VFC) program provides free pediatric vaccines to doctors who serve eligible
(generally low-income) children. VFC is funded entirely as an entitlement through federal Medicaid
appropriations and is exempt from sequestration. Amounts for FY2015 through the FY2017 request are
estimates.
b. ACA Section 4306 appropriated $25 million for a childhood obesity demonstration project,
http://www.cdc.gov/obesity/childhood/researchproject.html. The Medicare Access and CHIP
Reauthorization Act of 2015 (MACRA, P.L. 114-10) appropriated additional funding for the project; $10
million for the two-year period FY2016–FY2017.
c. New mandatory funding for FY2017 is proposed for CDC to assist state health departments in
implementing comprehensive suicide prevention programs.
d. Emergency supplemental appropriations for FY2015 for the response to the 2014 Ebola outbreak in West
Africa, provided in P.L. 113-164. See note above re: subsequent emergency appropriations for the Ebola
response.
e. For several years the budget request has called for elimination of the Preventive Health and Health Services
Block Grant (also called the “Prevention Block Grant”). For each of FY2015 and FY2016, Congress
provided it with $160 million from the PPHF.
f.
Amounts are estimated federal obligations.
g. ACA Section 10323(b) appropriated $23 million for the period FY2010-FY2014, and $20 million for each
five‐year period thereafter, in no‐year funding for the early detection of certain medical conditions related
to environmental health hazards in Libby, Montana. The amount presented (i.e., $19 million for FY2015
through FY2019) reflects sequestration as required for non-defense mandatory spending; see Table 2.

Food and Drug Administration (FDA)48
Agency Overview
FDA regulates the safety of human foods, dietary supplements, cosmetics, and animal foods; and
the safety and effectiveness of human drugs, biological products (e.g., vaccines), medical devices,
and animal drugs. It also regulates the manufacture of radiation-emitting products to protect the
public from hazardous levels of radiation. In 2009, Congress gave FDA the authority to regulate
the manufacture, marketing, and distribution of tobacco products in order to protect public health.
48

This section was written by (name redacted), Analyst in Health Policy.

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Seven centers within FDA represent the broad program areas for which the agency has
responsibility: the Center for Biologics Evaluation and Research (CBER), the Center for Devices
and Radiological Health (CDRH), the Center for Drug Evaluation and Research (CDER), the
Center for Food Safety and Applied Nutrition (CFSAN), the Center for Veterinary Medicine
(CVM), the National Center for Toxicological Research (NCTR), and the Center for Tobacco
Products (CTP). Several other offices have
agency-wide responsibilities.
For more information
CRS
Report
RL34334,
The Food and Drug Administration:
The Federal Food, Drug, and Cosmetic Act
Budget and Statutory History, FY1980-FY2007.
(FFDCA) is the principal source of FDA’s
statutory authority.49 FDA is also responsible
for administering certain provisions in other laws, most notably the PHSA.50 Although the FDA’s
authorizing committees in Congress are the committees with jurisdiction over public health
issues—the Senate Committee on Health, Education, Labor, and Pensions, and the House
Committee on Energy and Commerce—FDA’s assignment within the appropriations committees
reflects its origin as part of the Department of Agriculture. The Senate and House appropriations
subcommittees on Agriculture, Rural Development, FDA, and Related Agencies have jurisdiction
over FDA’s budget, even though the agency has been part of various federal health agencies
(HHS and its predecessors) since 1940.
FDA’s budget has two funding streams: annual appropriations (i.e., discretionary budget
authority, or BA) and industry user fees. In FDA’s annual appropriation, Congress sets both the
total amount of appropriated funds and the amount of user fees that the agency is authorized to
collect and obligate for that fiscal year. Appropriated funds are largely for the Salaries and
Expenses account, with a smaller amount for the Buildings and Facilities account. The several
different user fees, which account for 43% of FDA’s total FY2016 program level, contribute only
to the Salaries and Expenses account.
The largest and oldest FDA user fee that is linked to a specific program was first authorized by
the Prescription Drug User Fee Act (PDUFA, P.L. 102-571) in 1992. Appendix D presents the
authorizing legislation for current FDA user fees, sorted by the dollar amount they contribute to
the agency’s FY2016 budget. After PDUFA, Congress added user fee authorities regarding
medical devices, animal drugs, animal generic drugs, tobacco products, priority review, food
reinspection, food recall, voluntary qualified food importer, generic drugs, biosimilars, and, most
recently, outsourcing facilities (related to drug compounding) and some wholesale distributors
and third-party logistics providers (related to pharmaceutical supply chain security).51 Each of the
medical product fee authorities requires reauthorization every five years. Several indefinite
authorities apply to fees for mammography inspection, color additive certification, export
certification, and priority review vouchers.52

49

21 U.S.C. §§301 et seq.
PHSA Section 351 (21 U.S.C. §262) authorizes the regulation of biological products and states that FFDCA
requirements apply to biological products licensed under the PHSA. A listing of other laws containing provisions for
which FDA is responsible is at http://www.fda.gov/RegulatoryInformation/Legislation/default.htm.
51
CRS Report R42366, Prescription Drug User Fee Act (PDUFA): 2012 Reauthorization as PDUFA V ; CRS Report
R42508, The FDA Medical Device User Fee Program; CRS Report R40443, The FDA Food Safety Modernization Act
(P.L. 111-353); CRS Report R42680, The Food and Drug Administration Safety and Innovation Act (FDASIA, P.L.
112-144).
52
User fees provide varying proportions of funding for several FDA programs (see Table D-1). For example, the
agency’s tobacco regulatory activities are entirely supported through user fees paid by tobacco product manufacturers
and importers, and the toxicology program receives no user fee funds. In FY2016, fees account for 65% of the human
(continued...)
50

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Recent Trends in Agency Funding
Between FY2010 and FY2016, FDA’s funding increased from $3.1 billion to $4.7 billion.
Although discretionary appropriations increased by 16% over that time period, user fee revenue
more than doubled. In FY2016, user fees account for 43% of FDA’s total funding compared with
24% in FY2010.
The President’s FY2017 budget request was for a total program level of $4.826 billion, an
increase of $81 million (+2%) from the FY2016 total program level of $4.745 billion (see Table
6). The FY2017 budget request includes $2.743 billion for budget authority, an increase of $15
million (+0.5%) compared to the FY2016 enacted level of $2.728 billion, and $2.084 billion for
user fees, an increase of $66 million (+3%) compared to the FY2016 enacted level of $2.017
billion. In addition to the $2.084 billion in user fees from currently authorized programs, the
President requested $202 million in as yet unauthorized fees to support export certification, food
facility registration and inspection, food import, international courier, cosmetics, and food contact
substance notification activities. With those proposed fees, the President’s total user fee request
was $2.286 billion, bringing the total program level request to $5.029 billion. The FY2017
request also included $75 million in new mandatory resources to support the Cancer Moonshot
Initiative.53
Table 6. Food and Drug Administration (FDA)
(Millions of Dollars, by Fiscal Year)
2015a

2016

2017
request

Foods

903

999

1,024

Budget Authority

903

987

1,013

0

12

12

Human drugs

1,370

1,395

1,408

Budget Authority

482

492

492

User Fees

888

903

917

Biologics

326

355

360

Budget Authority

211

215

215

User Fees

115

139

145

Animal drugs and feeds

175

189

193

Budget Authority

148

159

162

User Fees

27

30

31

Devices and radiological health

443

450

460

Budget Authority

321

323

326

Program area

User Fees

(...continued)
drugs program budget, 40% of the biologics budget, 28% of the devices and radiological health budget, 16% of the
animal drugs and feeds budget, and 1% of the foods budget. Appendix D of this report presents additional detail.
53
For additional information about the Vice President’s Cancer Moonshot, see page 12 of the FDA FY2017
Justification of Estimates for Appropriations Committees, http://www.fda.gov/downloads/AboutFDA/
ReportsManualsForms/Reports/BudgetReports/UCM485237.pdf.

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User Fees

122

127

134

Tobacco products

554

564

596

Budget Authority

—

—

—

User Fees

554

564

596

Toxicological research

63

63

60

Budget Authority

63

63

60

User Fees

—

—

—

Headquarters/Commissioner’s Office

261

290

286

Budget Authority

173

182

178

User Fees

88

108

108

GSA rent

220

239

236

Budget Authority

169

177

170

User Fees

51

62

66

Other rent and rent-related activities

162

172

169

Budget Authority

116

122

115

User Fees

46

50

54

Export and color certification funds

11

13

15

Budget Authority

—

—

—

User Fees

11

13

15

Food and drug safety

12

0

0

Budget Authority

12

0

0

User Fees

0

0

0

Priority review vouchers

0

8

8

Budget Authority

—

—

—

User Fees

0

8

8

Buildings & Facilities

9

9

12

Budget Authority

9

9

12

User Fees

—

—

—

4,511b

4,745

4,826c

1,903d

2,017e

2,084f

2,608b

2,728

2,743

Total, Program Level
Less Funds From Other Sources
User Fees
Total, Discretionary Budget Authority

Sources: Prepared by CRS based on congressional budget justification documents and the HHS Budget in Brief,
available at http://www.hhs.gov/budget/.
Notes: Individual amounts may not add to subtotals or totals due to rounding.
Consistent with the Administration and congressional committee formats, each program area includes funding
designated for the responsible FDA center (e.g., the Center for Drug Evaluation and Research or the Center for
Food Safety and Applied Nutrition) and the portion of effort budgeted for the agency-wide Office of Regulatory
Affairs to commit to that area. It also apportions user fee revenue across the program areas as indicated in the
Administration’s request (e.g., 90% of the animal drug user fee revenue is designated for the animal drugs and

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feeds program, with the rest going to headquarters and Office of the Commissioner, GSA rent, and other rent
and rent-related activities categories).
a. This column shows the FY2015 actual amounts. A “0” in this column does not reflect a lack of authorization
for that program. For example, user fees for food are listed as “0,” meaning that no fees were collected in
FY2015 for the food program, but user fees for food were authorized in the FY2015 enacted bill.
b. The FY2015 Agriculture appropriations act provided an additional $25 million to FDA for Ebola response
and preparedness activities. Adding this amount to the FDA appropriations brought BA to $2,633 million
and the total program level to $4,536 million for FY2015.
c. This total does not include the $75 million in proposed new mandatory funding for the Vice President’s
Cancer Moonshot Initiative.
d. The FY2015 enacted bill included $1 million for fees related to pharmacy compounding that the President’s
request had not included in the FY2015 request submission.
e. The FY2016 enacted bill included $1 million for fees related to pharmacy compounding (Congressional
Budget Office estimate) that the President’s request had not included in the FY2016 request submission.
f.
For user fees in the Administration’s FY2017 request, this column shows only those that have been
authorized. Including the $202 million in proposed user fees, the President’s total user fee request is $2.286
billion, yielding a total program level request of $5.029 billion.

Health Resources and Services Administration
(HRSA)54
Agency Overview
HRSA is the federal agency charged with improving access to health care for those who are
uninsured, isolated, or medically vulnerable. The agency currently awards funding to more than
3,000 grantees, including community-based organizations; colleges and universities; hospitals;
state, local, and tribal governments; and private entities to support health services projects, such
as training health care workers or providing specific health services.55 HRSA also administers the
health centers program, which provides grants to non-profit entities that provide primary care
services to people who experience financial, geographic, cultural, or other barriers to health
care.56
HRSA is organized into five bureaus (see text box below) and 10 offices. Some offices focus on
specific populations or health care issues (e.g., Office of Women’s Health, Office of Rural Health
Policy), while others provide agency-wide support or technical assistance to HRSA’s regional
offices (e.g., Office of Planning, Analysis and Evaluation; Office of Regional Operations).57

54

This section was written by (name redacted), Specialist in Health Services.
See HRSA’s website at http://www.hrsa.gov.
56
42 U.S.C. §§254b.
57
See HRSA’s website at http://www.hrsa.gov.
55

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HRSA Bureaus
The Bureau of Primary Health Care administers the Health Centers program, authorized under Title III of the
PHSA. Community and other health centers provide access to primary care for individuals who are low-income,
uninsured, or living where health care is scarce.
The Bureau of Health Workforce administers scholarship, loan, and loan repayment programs that help
underserved communities recruit and retain health professionals. These programs include the National Health Service
Corps, NURSE Corps, and the Faculty Loan Repayment Program. The bureau also administers a number of programs
for health professions training and development of diversity and cultural competence in the health workforce. These
programs include the Oral Health Training Program, the Nursing Workforce Diversity Program, the Children’s
Hospitals Graduate Medical Education Program, the Teaching Health Center Graduate Medical Education program
funded under ACA, and the Scholarships for Disadvantaged Students Program. The Bureau of Health Professions also
administers the National Practitioner and Healthcare Integrity Protection Data Banks and the National Center for
Health Workforce Analysis. Titles III, VII, and VIII of the PHSA authorize programs in this bureau.
The Maternal and Child Health Bureau administers the Maternal and Child Health Block Grant and other
programs that support the infrastructure for maternal and child health services, including the Maternal, Infant, and
Early Childhood Home Visiting Program that was authorized and funded by ACA. These programs are authorized in
Title V of the Social Security Act (SSA). This bureau also administers Healthy Start, newborn hearing screening,
autism, and other programs authorized under Titles III, XI, XII, and XIX of the PHSA.
The HIV/AIDS Bureau administers the Ryan White HIV/AIDS program, which is the largest discretionary grant
program within HRSA and is focused on HIV/AIDS care. The Ryan White HIV/AIDS program administers grant
programs that provide early intervention, minority, and family services. It also administers the AIDS Drug Assistance
Program (ADAP). Title XXVI of the PHSA authorizes the Ryan White HIV/AIDS programs.
The Healthcare Systems Bureau provides national leadership and direction in targeted areas, such as organ and
bone marrow transplantation, poison control centers, and others. It also administers the 340B drug pricing program.
Titles III and XII of the PHSA authorize programs in this bureau.
Source: HRSA website, http://www.hrsa.gov/about/organization/bureaus/index.html.

As noted in the text box, the majority of HRSA’s programs are authorized by the PHSA;58 others
are authorized by the SSA. Additionally, Section 427(e) of the Federal Mine Safety and Health
Amendments Act (P.L. 95-164) authorizes the Black Lung Program, which supports clinics that
provide services to retired coal miners and others.

Recent Trends in Agency Funding
HRSA funding increased from $8.1 billion in FY2010 to $10.8 billion in FY2016 despite a
reduction in its discretionary appropriation during that time (see Table 7). Specifically,
discretionary appropriations declined by about 17%, falling from $7.5 billion to $6.2 billion.
Much of the decline in discretionary appropriations occurred because of the loss of discretionary
appropriations for the National Health Service Corps (NHSC) and the elimination of the
congressional earmark program that supported health care facility construction and renovation.

58

42 U.S.C. §§201 et seq.

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The overall growth in HRSA’s funding was primarily driven by increasing amounts from the
CHCF, which more than offset the decline in discretionary funding. CHCF funding has partially
supplanted (i.e., replaced) discretionary health center funding and has become the sole source of
funding for the NHSC program, which has not
received an annual discretionary appropriation
For more information
since FY2011.
CRS Report R44054, Health Resources and Services
With CHCF funding set to expire at the end of
FY2015, Congress included two more years of
CHCF funding in the Medicare Access and
CHIP Reauthorization Act of 2015
(MACRA);59 see Table 7 and Appendix A.
MACRA also extended funding for other
HRSA programs that were established and
initially funded by the ACA; notably, the
Maternal, Infant, and Early Childhood Home
Visiting Program and the Teaching Health
Center Program.

Administration (HRSA) Funding: Fact Sheet.
CRS Report R43937, Federal Health Centers: An Overview.
CRS Report R43920, National Health Service Corps:
Background and Trends in Funding and Recruitment.
CRS Report R42428, The Maternal and Child Health
Services Block Grant: Background and Funding.
CRS Report R43177, Health Workforce Programs in Title
VII of the Public Health Service Act.
CRS Report R43930, Maternal and Infant Early Childhood
Home Visiting (MIECHV) Program: Background and Funding.

Table 7. Health Resources and Services Administration (HRSA)
(Millions of Dollars, by Fiscal Year)
2015

2016a

2017
Request

5,001

5,092

5,092

4,901

4,992

4,992

Discretionary BA (non-add)

(1,392)

(1,392)

(1,242)

CHCF Transfer (non-add)

(3,509)

(3,600)

(3,600)

—

—

(150)

100

100

100

1,058

1,228

1,273

287

310

380

Discretionary BA (non-add)

(0)

(0)

(20)

CHCF Transfer (non-add)

(287)

(310)

(310)

—

—

(50)

Faculty Loan Repayment Program

1

1

1

Training for Diversityb

82

82

85

Primary Care Training and Enhancement

39

39

39

Interdisciplinary, Community-Based Linkagesc

73

129

105

Public Health Workforce Development

21

21

17

Nursing Workforce Developmentd

232

229

229

Children’s Hospitals GME Payments

265

295

295

Bureau or Activity
Primary Care
Health Centers

New mandatory proposal (non-add)
Health Centers Tort Claims
Health Workforce
National Health Service Corps (NHSC)

New mandatory proposal (non-add)

59

P.L. 114-10, 129 Stat. 87.

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GME Targeted Support (New mandatory proposal)

—

—

(295)

Teaching Health Center GME Payments (ACA §5508(c))

—

60

60

Other Health Workforce Programse

39

41

41

National Practitioner Data Bank (User Fees)

19

21

21

1,254

1,250

1,250

Maternal and Child Health Block Grant

637

638

638

Healthy Start

102

104

104

Maternal, Infant Home Visiting (ACA §2951)

400

400

400

Family-to-Family Health Centers (ACA §5507)f

5

5

5

Other Maternal and Child Health Programsg

112

103

103

2,319

2,323

2,332

PHS Evaluation Fund (non-add)

—

—

(34)

Health Care Systems

103

103

119

Health Care Systems Programsh

76

76

76

Hansen’s Disease Programs

17

17

17

340B Drug Pricing Programs

10

10

26

User fees (non-add)

—

—

(9)

Rural Health

147

150

144

Other Activities

683

685

706

Family Planning

286

286

300

Program Management

154

154

157

8

8

9

235

237

240

10,565

10,831

10,916

PHS Evaluation Set-Aside

—

—

34

User Fees

19

19

30

VICP Trust Fund (Mandatory)

235

237

240

3,796

3,910

3,910

ACA Mandatory Funds: Other

5

65

65

Maternal, Infant Home Visiting

400

400

400

Proposed New Mandatory Funds

—

—

495

6,112

6,197

5,743

Maternal and Child Health

Ryan White HIV/AIDS

Vaccine Injury Compensation Program (VICP) Operations
VICP Trust Fund
Total, Program Level
Less Funds From Other Sources

ACA Mandatory Funds: CHCF Transfers

Total, Discretionary Budget Authority

Source: Prepared by CRS based on congressional budget justification documents and the HHS Budget in Brief,
available at http://www.hhs.gov/budget/; and from P.L. 114-10.
Notes: Individual amounts may not add to subtotals or totals due to rounding.
a. Includes funds appropriated in MACRA (P.L. 114-10).
b. Training for Diversity includes the following programs: Centers for Excellence, Scholarships for
Disadvantaged Students, and the Health Careers Opportunity Program.

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c.

d.

e.
f.
g.

h.

Interdisciplinary, Community-based Linkages includes the following programs: Area Health Education
Centers (AHEC), Geriatric Programs, and Mental and Behavioral Health Education and Training. In FY2017,
the President’s Budget does not request funding for the Area Health Education Center program.
Nursing Workforce Development includes the following programs: NURSE Corps (formerly the Nursing
Education Loan Repayment and Scholarship Program); Advanced Nursing Education; Nursing Workforce
Diversity; Nurse Education, Practice, Quality and Retention; Nurse Faculty Loan Program; and
Comprehensive Geriatric Education.
Other Health Workforce Programs include Health Care Workforce Assessment, and Oral Health Training.
P.L. 113-93 provided $2.5 million for this program for FY2015, which was repealed when P.L. 114-10
provided a full year of funding ($5 million) for this program for FY2015.
Other Maternal and Child Health Programs include Autism and Other Developmental Disorders, Traumatic
Brain Injury, Sickle Cell Services Demonstration, Universal Newborn Hearing Screening, Emergency Medical
Services for Children, and Heritable Disorders.
Health Care Systems Programs include Organ Transplantation, National Cord Blood Inventory, C.W. Bill
Young Cell Transplantation Program, and Poison Control Centers.

Indian Health Service (IHS)60
Agency Overview
IHS provides health care for approximately 2.2 million eligible American Indians/Alaska Natives
through a system of programs and facilities located on or near Indian reservations, and through
contractors in certain urban areas. IHS provides services to members of 566 federally recognized
tribes either directly or through facilities and programs operated by Indian Tribes or Tribal
Organizations through self-determination contracts and self-governance compacts authorized in
the Indian Self-Determination and Education Assistance Act (ISDEAA).61
For more information
The Snyder Act of 1921 provides general
62
statutory authority for IHS. In addition,
CRS Report R43330, The Indian Health Service (IHS): An
Overview.
specific IHS programs are authorized by two
CRS Report R44040, Indian Health Service (IHS) Funding:
acts: the Indian Sanitation Facilities Act of
Fact Sheet.
195963 and the Indian Health Care
Improvement Act (IHCIA).64 The Indian
Sanitation Facilities Act authorizes the IHS to construct sanitation facilities for Indian
communities and homes; and IHCIA authorizes programs such as urban health, health professions
recruitment, and substance abuse and mental health treatment, and permits IHS to receive
reimbursements from Medicare, Medicaid, the State Children’s Health Insurance Program
(CHIP), the Department of Veterans Affairs (VA), and third-party insurers.
As discussed earlier, IHS receives its appropriations through the Interior/Environment
appropriations act. IHS funding is not subject to the PHS set-aside.
60

This section was written by (name redacted), Specialist in Health Services.
P.L. 93-638; 25 U.S.C. §§450 et seq.
62
P.L. 67-85, as amended; 25 U.S.C. §13. The Snyder Act established this authority as part of the Bureau of Indian
Affairs within the Department of the Interior. The Transfer Act of 1954 (P.L. 83-568) transferred this authority to the
U.S. Surgeon General within the Department of Health, Education, and Welfare (now HHS).
63
P.L. 86-121; 42 U.S.C. §2004a.
64
P.L. 94-437, as amended; 25 U.S.C. §§1601 et seq., and 42 U.S.C. §§1395qq and 1396j (and amending other
sections). This act was permanently reauthorized by the ACA. See CRS Report R41630, The Indian Health Care
Improvement Act Reauthorization and Extension as Enacted by the ACA: Detailed Summary and Timeline.
61

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Recent Trends in Agency Funding
IHS’s funding, which includes discretionary appropriations and collections from third-party
payers of health care, increased between FY2010 and FY2016 from $5.1 billion to $6.2 billion
(see Table 8). This increase was driven both by increased discretionary appropriations, which
rose from $4.1 billion to $4.8 billion, and by increased collections, which rose from $891 million
to $1.1 billion. Much of the funding increase was used to support clinical services. Discretionary
appropriations, in particular, have increased funding for purchased/referred care, a subset of the
clinical services budget line that applies to funds used to refer patients to an outside provider
when the IHS cannot provide a service within its system. Funding allocated for contract support
costs has also increased since FY2014.
Contract support costs are funds that Indian Tribes and Tribal Organizations receive, in addition
to operating funds, when they operate a facility or program under an ISDEAA contract or
compact. According to the U.S. Supreme Court, these costs must be fully funded even if Congress
does not appropriate sufficient funds to cover all tribes’ contract support costs. According to IHS,
beginning in FY2016, the amount allocated for contract support costs is sufficient for the
contracts and compacts that IHS enters into. Given the ruling that stated that these are required
costs, the President’s Budget includes a proposal to reclassify contract support costs as a
mandatory three-year appropriation.65
Table 8. Indian Health Service (IHS)
(Millions of Dollars, by Fiscal Year)
Program or Activity
Clinical and Preventive Services

2015

2017
Request

2016

4,652

4,737

4,998

4,348a

4,431b

4,682b

(914)

(914)

(962)

Preventive Health

154

156

166

Special Diabetes Program for Indiansd

150

150

150

Other Health Services

831

891

985

Urban Health Projects

44

45

48

Indian Health Professions

48

48

59

Indian Health Professions Expansion (non-add)

—

—

(10)

Tribal Management/Self-Governance

8

8

8

Direct Operations

68

72

70

Contract Support Costse

663

718

800

468

532

578

Maintenance and Improvement

62f

83g

85g

Sanitation Facilities Construction

79

99

103

Health Care Facilities Construction

85

105

132

Clinical Services
Purchased/Referred Care (non-add)c

Health Facilities

65

CRS Legal Sidebar WSLG119, Supreme Court Holds the Government Liable for Contract Support Costs in Indian
Self-Determination Contracts Even When Congress Fails to Appropriate Adequate Funds.

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Facilities/Environmental Health Support

220

223

234

Medical Equipment

23

23

24

Total, Program Level

5,951

6,160

6,562

1,151

1,194

1,194

8

9

9

Special Diabetes Program for Indiansd

150

150

150

Tribal Crisis Response Fund

—

—

15h

Indian Health Professions Expansion

—

—

10

4,642

4,808

5,185

Less Funds from Other Sources
Collections
Rental of Staff Quarters

Total, Discretionary Budget Authority

Sources: Prepared by CRS based on congressional budget justification documents and the HHS Budget in Brief,
available at http://www.hhs.gov/budget/.
Notes: Individual amounts may not add to subtotals or totals due to rounding.
a. Includes $1,151 million in collections from Medicare, Medicaid, CHIP, the Department of Veterans Affairs,
private insurance, and other programs.
b. Includes an estimated $1,194 million in collections from Medicare, Medicaid, CHIP, the Department of
Veterans Affairs, private insurance, and other programs.
c. This was previously referred to as “Contract Health Services.”
d. PHSA §330C provides an annual appropriation of $150 million through FY2017 for this program. As
discussed earlier in this report, these mandatory funds were subject to a 2% sequestration in FY2013 and
FY2014.
e. Beginning in FY2016, Contract Support Costs were funded as an indefinite discretionary appropriation. For
FY2018 and beyond, the President’s Budget includes a proposal to reclassify Contract Support Costs as a
mandatory three-year appropriation.
f.
Includes $8 million that IHS received from rental of staff quarters.
g. Includes $9 million that IHS expects to receive from rental of staff quarters.
h. These funds would be available as part of a new Administration initiative to improve Tribal Behavioral
Health. The initiative would include crisis response funds for Indian Tribes experiencing behavioral health
crises and would increase funding for IHS scholarship and loan repayment for behavioral health providers.

National Institutes of Health (NIH)66
Agency Overview
NIH is the primary agency of the federal government charged with performing and supporting
biomedical and behavioral research. Its activities cover a wide range of basic, clinical, and
translational research, as well as research training and health information collection and
dissemination. The agency is organized into 27 research institutes and centers, headed by the NIH
Director. The Office of the Director (OD) sets overall policy for NIH and coordinates the
programs and activities of all NIH components, particularly in areas of research that involve
multiple institutes. The institutes and centers (collectively called ICs) focus on particular diseases,
areas of human health and development, or aspects of research support. Each IC plans and
manages its own research programs in coordination with the Office of the Director.
66

This section was written by (name redacted), Specialist in Biomedical Policy.

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The bulk of NIH’s budget, about 81%, goes
For more information
out to the extramural research community
CRS
Report
R41705,
The National Institutes of Health
through grants, contracts, and other awards.
(NIH):
Background
and
Congressional Issues.
The funding supports research performed by
CRS
Report
R43341,
NIH
Funding: FY1994-FY2017.
more than 30,000 individuals who work at
CRS Report R43944, Federal Research and Development
more than 2,500 universities, hospitals,
Funding: FY2016.
medical schools, and other research
67
institutions around the country and abroad. A
smaller proportion of the budget, about 11%, supports the intramural research programs of the
ICs, funding research performed by NIH scientists and non-employee trainees in the NIH
laboratories and Clinical Center. The remaining 6% funds various research management, support,
and facilities’ needs.
NIH derives its statutory authority from the PHSA. Title III, Section 301 of the PHSA grants the
HHS Secretary broad permanent authority to conduct and sponsor research. In addition, Title IV,
“National Research Institutes,” authorizes in greater detail various activities, functions, and
responsibilities of the NIH Director and the institutes and centers. All of the ICs are covered by
specific provisions in the PHSA, but they vary considerably in the amount of detail included in
the statutory language. There are few time-and-dollar authorization levels specified for individual
activities. Congress mandated a significant reorganization of IC responsibilities in the FY2012
Consolidated Appropriations Act (P.L. 112-74, Division F) by creating a new National Center for
Advancing Translational Sciences (NCATS) and eliminating the National Center for Research
Resources (NCRR). Activities relating to translational sciences from NCRR and many other ICs
were consolidated in NCATS, and NCRR’s other programs were moved to several other ICs and
the OD.
NIH gets almost its entire funding (99.5%) from annual discretionary appropriations. As shown in
Table 9, the annual LHHS appropriations act provides separate appropriations to 24 of the ICs,
the OD, and the Buildings and Facilities account. One of the ICs (Environmental Health
Sciences) also receives funding from the Interior/Environment appropriations act. In addition,
NIH receives a mandatory annual appropriation ($150 million) for type 1 diabetes research.

Recent Trends in Agency Funding
Between FY1994 and FY1998, funding for NIH grew from $11.0 billion to $13.7 billion in
nominal terms. Over the next five years, Congress doubled the NIH budget to $27.2 billion in
FY2003. In each of these years, the agency received annual funding increases of 14% to 16%.
Since FY2003, however, NIH funding has increased more gradually in nominal dollars. Funding
peaked in FY2010 before declining in FY2011 through FY2013 with small increases in
subsequent years. The NIH program level in FY2016 is $32.311 billion.
For FY2017, the Obama Administration requests an NIH program level total of $33.136 billion,
an increase of $825 million (2.6%) over FY2016. The FY2017 program level request includes
$847 million in PHS set-aside funds and $1.825 billion in proposed new mandatory funding. The
FY2017 request includes $755 million for the Vice President’s Cancer Moonshot, of which $680
million is allocated for the National Cancer Institute, and $75 million would be transferred from
NIH to FDA.

67

HHS, FY2017 Budget in Brief, p. 47, http://www.hhs.gov/sites/default/files/fy2017-budget-in-brief.pdf.

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Table 9. National Institutes of Health (NIH)
(Millions of Dollars, by Fiscal Year)
2015

2016

2017
Request

Cancer (NCI)

4,953

5,214

5,894

Heart/Lung/Blood (NHLBI)

2,996

3,114

3,114

Dental/Craniofacial Research (NIDCR)

398

413

413

Diabetes/Digestive/Kidney (NIDDK)a

1,899

1,966

1,966

Neurological Disorders/Stroke (NINDS)

1,605

1,695

1,695

Allergy/Infectious Diseases (NIAID)

4,418

4,716

4,716

General Medical Sciences (NIGMS)b

2,372

2,512

2,512

Child Health/Human Development (NICHD)

1,287

1,338

1,338

Eye (NEI)

677

708

708

Environmental Health Sciences (NIEHS)

667

694

694

NIEHS, Interior/Environment appropriation

77

77

77

1,198

1,598

1,598

Arthritis/Musculoskeletal/Skin (NIAMS)

522

542

542

Deafness/Communication Disorders (NIDCD)

405

423

423

Mental Health (NIMH)

1,434

1,519

1,519

Drug Abuse (NIDA)

1,016

1,051

1,051

Alcohol Abuse/Alcoholism (NIAAA)

447

467

467

Nursing Research (NINR)

141

146

146

Human Genome Research (NHGRI)

499

513

513

Biomedical Imaging/Bioengineering (NIBIB)

327

344

344

Minority Health/Health Disparities (NIMHD)

271

281

281

Complementary/Integrative Health (NCCIH)c

124

130

130

Advancing Translational Sciences (NCATS)

633

685

685

Fogarty International Center (FIC)

68

70

70

National Library of Medicine (NLM)

337

396

396

Office of Director (OD)

1,414

1,571

1,716

Buildings & Facilities (B&F)

129

129

129

Total, Program Level

30,311

32,311

33,136

PHS Evaluation Set-Asideb

715

780

847

Type 1 Diabetes Research (NIDDK)d

150

150

150

Proposed New Mandatory Funds

—

—

1,825

29,446

31,381

30,314

Institutes and Centers (ICs)

Aging (NIA)

Less Funds From Other Sources

Total, Discretionary Budget Authority

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Sources: Funding amounts for FY2015 and FY2016 are taken from the FY2016 Justification of Estimates for
Appropriation Committees, Vol. 1, Overview, table on “Budget Request for Institute and Center,” p.85 at
http://officeofbudget.od.nih.gov/br.html.
Notes: Totals may differ from the sum of the components due to rounding.
a. Amounts for the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) include $150
million in mandatory funding for type 1 diabetes research (see note e).
b. Amounts for National Institute of General Medical Sciences (NIGMS) include the PHS set-aside funds.
c. Reflects name change from National Center for Complementary and Alternative Medicine to National
Center for Complementary and Integrative Health; provision included in P.L. 113-235.
d. Mandatory funds available to NIDDK for type 1 diabetes research under PHSA §330B (provided by P.L.
114-10 for FY2016 and FY2017).

Substance Abuse and Mental Health Services
Administration (SAMHSA)68
Agency Overview
SAMHSA is the lead federal agency for increasing access to behavioral health services. It
supports community-based mental health and substance abuse treatment and prevention services
through formula grants to the states and U.S. territories and through competitive grant programs
that fund states, territories, tribal organizations, local communities, and private entities. SAMHSA
also engages in a range of other activities, such as technical assistance, data collection, and
workforce development.
SAMHSA and most of its programs and activities are authorized under Title V of the PHSA,
which organizes SAMHSA in three centers:




Center for Substance Abuse Treatment (CSAT)69
Center for Substance Abuse Prevention (CSAP)70
Center for Mental Health Services (CMHS)71

Each center has general statutory authority, called Programs of Regional and National
Significance (PRNS), under which it has established grant programs for states and communities
to address their important substance abuse and mental health needs. PHSA Title V also authorizes
a number of specific grant programs, referred to as categorical grants.
SAMHSA’s two largest grant programs are
separately authorized under PHSA Title XIX,
Part B. The Community Mental Health
Services block grant falls within CMHS.72 The

For more information
CRS Report R43968, SAMHSA FY2016 Budget Request and
Funding History: A Fact Sheet.

68

This section was written by (name redacted), Analyst in Health Policy.
PHSA Title V, Part B, Subpart 1; 42 U.S.C. §§290bb et seq.
70
PHSA Title V, Part B, Subpart 2; 42 U.S.C. §§290bb-21 et seq.
71
PHSA Title V, Part B, Subpart 3; 42 U.S.C. §§290bb-31 et seq.
72
PHSA Title XIX, Part B, Subpart I; 42 U.S.C. §§300x et seq.
69

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full amount of the Substance Abuse Prevention and Treatment block grant falls within CSAT,
although no less than 20% of each state’s block grant must be used for prevention.73
In addition to the three statutorily defined centers, SAMHSA’s budget reflects a fourth category,
“health surveillance and program support,” for other activities such as collecting data, providing
statistical and analytic support, raising public awareness, developing the behavioral health
workforce, and maintaining the National Registry of Evidence-based Programs and Practices.74
The last comprehensive reauthorization of SAMHSA and its programs occurred in 2000 as part of
the Children’s Health Act,75 which also added “charitable choice” provisions allowing religious
organizations to receive funding for substance abuse prevention and treatment services without
altering their religious character.76 Since 2000, Congress has expanded some of SAMHSA’s
programs and activities without taking up comprehensive reauthorization. Although
authorizations of appropriations for most of SAMHSA’s grant programs expired at the end of
FY2003, many of these programs continue to receive annual discretionary appropriations.

Recent Trends in Agency Funding
Over the past 10 years (FY2007–FY2016), SAMHSA’s program-level funding has increased by
12%, from $3.3 billion to $3.7 billion. It has not, however, increased every year. For example, it
decreased from FY2012 ($3.6 billion) to FY2013 ($3.4 billion) due to sequestration, then
rebounded in FY2014 ($3.6 billion).
Relative to FY2016, SAMHSA’s FY2017 request would increase program-level funding by 16%
(to $4.3 billion) while decreasing discretionary budget authority by 3% (to $3.5 billion); see
Table 10. It would make up the difference with increased PHS set-aside funds, increased PPHF
transfers, and new mandatory funding proposed for FY2017 and FY2018. The proposed new
mandatory funding would support three programs: (1) State Targeted Response Cooperative
Agreements, which would aim to increase access to opioid addiction treatment by addressing the
most commonly identified barriers to treatment; (2) Evidence-based Early Interventions, which
would provide formula grants to states to support early interventions for individuals with serious
mental illness; and (3) Cohort Monitoring and Evaluation of Medication-Assisted Treatment,
which would evaluate addiction treatment outcomes with the goal of increasing effectiveness.
Table 10. Substance Abuse and Mental Health Services Administration (SAMHSA)
(Millions of Dollars, by Fiscal Year)
Program or Activity
Center for Mental Health Services (CMHS)
Mental Health Block Grant

2015

2016a

2017
Request

1,071

1,159

1,274

483

533

533

73

PHSA Title XIX, Part B, Subpart II; 42 U.S.C. §§300x-21 et seq.
In the Consolidated Appropriations Act, 2012 (P.L. 112-74, Division F, Title II; 125 Stat. 1073) and the
accompanying conference report (H.Rept. 112-331, pp. 1139-1142), Congress rejected proposed changes to
SAMHSA’s budget structure in the FY2012 budget request. Congress directed that future budget requests reflect the
structure of the three centers (i.e., CMHS, CSAT, and CSAP) and the Health Surveillance and Program Support
account. SAMHSA’s subsequent budget requests have reflected this structure.
75
P.L. 106-310, Titles XXXI-XXXIV.
76
PHSA §1955, 42 U.S.C. §300x-65; PHSA §§581 et seq., 42 U.S.C. §§290kk et seq.
74

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PHS Evaluation Set-Aside (non-add)

(21)

(21)

(21)

Programs of Regional & National Significance

371

407

406

PHS Evaluation Set-Aside (non-add)

—

—

(10)

PPHF Transfer (non-add)

(12)

(12)

(10)

Children’s Mental Health Services

117

119

119

PATH Homeless Formula Grant

65

65

65

Protection & Advocacy Formula Grant

36

36

36

Evidence-Based Early Interventions (New mandatory proposal)

—

—

115

2,181

2,192

2,661

1,820

1,858

1,858

PHS Evaluation Set-Aside (non-add)

(79)

(79)

(79)

Programs of Regional & National Significance

361

334

343

PHS Evaluation Set-Aside (non-add)

(2)

(2)

(30)

Monitoring & Evaluation of MAT Outcomes (New mandatory
proposal, non-add)

—

—

(15)

—

—

460

Center for Substance Abuse Prevention (CSAP)

175

211

211

Programs of Regional & National Significance

175

211

211

PHS Evaluation Set-Aside (non-add)

—

—

(16)

Health Surveillance and Program Support

159

169

175

Health Surveillance and Program Supportb

119

127

125

PHS Evaluation Set-Aside (non-add)

(30)

(30)

(29)

PPHF Transfer (non-add)

—

—

(18)

Public Awareness and Support

13

16

13

PHS Evaluation Set-Aside (non-add)

—

—

(13)

Performance & Quality Information Systems

13

13

13

—

—

(13)

12

13

23

PHS Evaluation Set-Aside (non-add)

(1)

(1)

(1)

Data Request and Publications User Fees

2

2

2

3,586

3,731

4,322

Less Funds From Other Sources

—

—

—

PHS Evaluation Set-Aside

134

134

214

PPHF Transfers

12

12

28

Data Request and Publications User Fees

2

2

2

Proposed New Mandatory Funds

—

—

590

3,439

3,584

3,489

Center for Substance Abuse Treatment (CSAT)
Substance Abuse Block Grant

State Targeted Response Cooperative Agreements (New
mandatory proposal)

PHS Evaluation Funds (non-add)
Agency-Wide Initiatives

Total, Program Level

Total, Discretionary Budget Authority

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Sources: Prepared by CRS based on congressional budget justification documents and the HHS Budget in Brief,
available at http://www.hhs.gov/budget/.
Notes: Individual amounts may not add to subtotals or totals due to rounding.
a. Amounts may change during the year due to transfers, reprogramming, or other adjustments.
b. For the FY2015, FY2016, and FY2017 request amounts, SAMHSA’s FY2017 budget request indicates that
the figures have been comparably adjusted to reflect (1) the proposed transfer of one program (the
Behavioral Health Workforce Education and Training Program) from SAMHSA to HRSA in FY2017, and (2)
a proposed single appropriation for a program (the Minority Fellowship Program) that is currently funded
through multiple SAMHSA centers.

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Appendix A. Community Health Center Fund
ACA Section 10503 established a Community Health Center Fund (CHCF) to provide
supplemental funding for community and other health centers and the National Health Service
Corps (NHSC). The law provided annual appropriations to the CHCF totaling $11 billion over the
five-year period FY2011 through FY2015. Of that total, $9.5 billion was for health center
operations and the remaining $1.5 billion was for the NHSC.
The Medicare Access and CHIP Reauthorization Act of 2015 (MACRA)77 appropriated two more
years of funding to the CHCF. For both FY2016 and FY2017, MACRA provided $3.6 billion for
health center operations and $310 million for the NHSC.
CHCF funding has partially supplanted discretionary funding for the health center program and
entirely replaced discretionary funding for the NHSC (see Table 7).
Table A-1 shows the amounts appropriated to the CHCF for each fiscal year as well as the postsequestration levels for FY2013-FY2015. As discussed earlier in this report, the FY2016 CHCF
funding was not subject to sequestration. CHCF funds are awarded to the various types of health
centers that are supported by the federal health center program. Those include community health
centers and migrant health centers, as well as facilities that serve the homeless and residents of
public housing. Sequestration of CHCF funding for community health centers and migrant health
centers is capped at 2%, whereas CHCF funding for the other types of facilities (i.e., health
centers for the homeless and for public housing residents) and for the NHSC is fully sequestrable
at the applicable rate for nonexempt nondefense mandatory spending (see Table 2).
Table A-1. Community Health Center Fund, FY2011-FY2017
(Millions of Dollars, by Fiscal Year)
Program

2011

2012

2013

2014

2015

2016

2017

Total

Health Center Program

1,000

1,200

1,500

2,200

3,600

3,600

3,600

16,700

Post-sequestration (non-add)

—

—

(1,465)

(2,145)

(3,509)

—

(3,510)

National Health Service Corps

290

295

300

305

310

310

310

Post-sequestration (non-add)

—

—

(285)

(283)

(287)

—

(289)

1,290

1,495

1,800

2,505

3,910

3,910

3,910

Total

2,120

18,820

Sources: Prepared by CRS based on ACA Section 10503, MACRA Section 221, and the HHS Budget in Brief
(FY2015-FY2017), available at http://www.hhs.gov/budget/.
Notes: The ACA also included a one-time appropriation of $1.5 billion for health center construction and
renovation. Those funds are separate from the CHCF and are not included in this table.

77

P.L. 114-10, 129 Stat. 87.

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Appendix B. Prevention and Public Health Fund
(PPHF)
ACA Section 4002 established the Prevention and Public Health Fund (PPHF), to be administered
by the HHS Secretary, and provided it with a permanent annual appropriation. Under the ACA as
originally enacted, PPHF’s annual appropriation would increase from $500 million for FY2010 to
$2 billion for FY2015 and each subsequent fiscal year. However, the Middle Class Tax Relief and
Job Creation Act of 2012 amended the ACA by reducing the PPHF appropriation from FY2013
through FY2021 as part of a package of offsets to help cover the costs of the law.78 The PPHF
annual appropriation is now $1 billion through FY2017, and thereafter will increase in increments
to $2 billion for FY2022 and each subsequent fiscal year.
The HHS Secretary is instructed to transfer amounts from the PPHF to agencies for prevention,
wellness, and public health activities. The funds are available to the Secretary at the beginning of
each fiscal year. The Administration’s annual budget sets out the intended distribution and use of
PPHF funds for that fiscal year. The Secretary determined the distribution of PPHF funds for
FY2010 through FY2013. For FY2014 through FY2016, provisions in appropriations acts
explicitly directed the distribution of PPHF funds, prohibiting the Secretary from making further
transfers.79
As discussed earlier in the report, the PPHF appropriation is fully sequestrable at the applicable
percentage rate for nonexempt nondefense mandatory spending (see Table 2). Sequestration is
applied to the entire appropriation by the Secretary before funds are transferred to the agencies.
The distribution of PPHF funds to HHS agencies for FY2010 through the FY2017 President’s
budget proposal is presented in Table B-1. Further details regarding PPHF distributions to CDC
and SAMHSA are provided in the respective agency budget tables in the body of this report.
For FY2013, the Secretary transferred almost half of available PPHF funds to CMS for ACA
implementation, as shown in Table B-1. This transfer reduced the PPHF funds that had been
initially allocated to CDC and other PHS agencies. Along with the sequestration of discretionary
funding in FY2013, the loss of PPHF funds that year had a significant effect on CDC’s budget.80
In determining the transfer of PPHF funds for FY2010 through FY2013, the Secretary funded a
mix of pre-existing programs and activities, and programs and activities newly authorized under
the ACA. In directing the distribution of FY2014, FY2015, and FY2016 PPHF funds, annual
appropriations acts (and accompanying report language) in most cases funded pre-existing
programs and activities. In some cases the PPHF contribution for FY2016 made up more than
50% of a program’s total funding. Examples include CDC immunization grants to states (54%)
and tobacco prevention activities (60%). The CDC Preventive Health and Health Services Block
Grant and the lead poisoning prevention program received 100% of their FY2016 funding from
the PPHF.

78

P.L. 112-96, Section 3205; 126 Stat. 194. Amounts in current law are codified at 42 U.S.C. §300u-11.
See for example, for FY2015, P.L. 113-235, Consolidated and Further Continuing Appropriations Act, 2015, §219 of
general provisions for Labor, Health and Human Services, and Education, 128 Stat. 2489.
80
See CDC, “FY2013 Operating Plan” and “FY2013 Sequester Impacts,” http://www.cdc.gov/budget/fy2013/
operating-plans.html.
79

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Table B-1. PPHF Transfers to HHS Agencies
(Millions of Dollars, by Fiscal Year)
Agency

2010

2011

2012

2013

2014

2015

2016

2017
Proposala

ACL
AHRQ
CDC
CMS
HRSA
OS
SAMHSA

0
6
192
0
271
12
20

0
12
611
0
20
19
88

20
12
809
0
37
30
92

9
6
463
454b
2
0
15

28
7
831
0
0
0
62

28
0
886
0
0
0
12

28
0
892
0
0
0
12

28
0
944
0
0
0
28

Sequester

—

—

—

51

72

73

68

—

Total

500

750

1,000

1,000

1,000

1,000

1,000

1,000

Sources: Prepared by CRS from HHS agency congressional budget justifications, http://www.hhs.gov/budget/;
HHS, “Prevention and Public Health Fund,” funding distribution tables, http://www.hhs.gov/open/
recordsandreports/prevention/index.html; and Prevention and Public Health Fund transfer tables in explanatory
statements accompanying appropriations for FY2014 through FY2016.
Notes: Individual amounts may not add to totals due to rounding. ACL is the Administration for Community
Living; OS is the Office of the HHS Secretary.
a. Distribution proposed by the Administration. This is not a budget request, as PPHF funds have already been
appropriated. Amounts do not reflect the 6.9% sequestration (i.e., $69 million) for FY2017 required under
current law; see Table 2.
b. Funds were used for implementation of insurance exchanges under the ACA. CMS, Justification of Estimates
for Appropriations Committees, Fiscal Year 2015, p. 349, http://www.hhs.gov/budget/.

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Appendix C. Patient-Centered Outcomes Research
Trust Fund
ACA Section 6301(e) established the Patient-Centered Outcomes Research Trust Fund (PCORTF)
to support comparative clinical effectiveness research at both HHS and the Patient-Centered
Outcomes Research Institute (PCORI).81 The law provided annual funding to the PCORTF over
the period FY2010-FY2019 from the following three sources: (1) annual appropriations; (2) fees
on health insurance and self-insured plans; and (3) transfers from the Medicare Part A and Part B
trust funds.
Specifically, the ACA appropriated the following amounts to the PCORTF: (1) $10 million for
FY2010; (2) $50 million for FY2011; and (3) $150 million for each of FY2012 through FY2019.
In addition, for each of FY2013 through FY2019, the ACA appropriated an amount equivalent to
the net revenues from a new fee that the law imposes on health insurance policies and self-insured
plans. For policy/plan years ending during FY2013, the fee equals $1 multiplied by the number of
covered lives. For policy/plan years ending during each subsequent fiscal year through FY2019,
the fee equals $2 multiplied by the number of covered lives. Finally, transfers to PCORTF from
the Medicare Part A and Part B trust funds are calculated by multiplying the average number of
individuals entitled to benefits under Medicare Part A, or enrolled in Medicare Part B, by $1 (for
FY2013) or by $2 (for each of FY2014 through FY2019).
For each of FY2011 through FY2019, the ACA requires 80% of the PCORTF funds to be made
available to PCORI, and the remaining 20% of funds to be transferred to the HHS Secretary for
carrying out PHSA Section 937.82 Of the total amount transferred to HHS, 80% is to be
distributed to AHRQ. Table C-1 shows the allocation of PCORTF funds through FY2017.
Table C-1. Distribution of PCORTF Funding
(Millions of Dollars, by Fiscal Year)
Funding Recipient

2011

2012

2013

2014

2015

2016
Est.

2017
Est.

PCORI

40

120

289

376

396

472

530

HHS

10

30

72

94

99

118

132

AHRQ (non-add)

(8)

(24)

(58)

(75)

(80)

(94)

(106)

Office of the Secretary
(non-add)

(2)

(6)

(14)

(19)

(19)

(24)

(26)

50

150

361

470

495

590

662

Total

Source: CRS calculations using data provided in Office of Management and Budget, Budget of the U.S.
Government, Appendix (FY2013-FY2017).

81

PCORI (established by ACA Section 6301(a), adding new SSA Section 1181) is a non-governmental body
authorized by Congress to evaluate existing research and to conduct original research examining the relative health
outcomes, clinical effectiveness, and appropriateness of different medical treatments. See http://www.pcori.org.
82
ACA Section 6301(b) added a new PHSA Section 937 requiring the broad dissemination of research findings
published by PCORI. See Table 4.

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Appendix D. FDA User Fee Authorizations
Table D-1. FDA User Fee Authorizations and Revenue
(Millions of Dollars, In Order of FY2016 Anticipated Revenue)
FY2016
Revenue

User Fee

Initial Authorizing Legislation and Year

Prescription drug

Prescription Drug User Fee Act (PDUFA), 1992
(P.L. 102-300)

851

Tobacco product

Family Smoking Prevention and Tobacco Control Act, 2009
(P.L. 111-31)

599

Generic drug

Food and Drug Administration Safety and Innovation Act (FDASIA), 2012
(P.L. 112-144)

318

Medical device

Medical Device User Fee and Modernization Act (MDUFMA), 2002
(P.L. 107-250)

138

Animal drug

Animal Drug User Fee Act (ADUFA), 2003
(P.L. 108-130)

23

Biosimilars

Food and Drug Administration Safety and Innovation Act (FDASIA), 2012
(P.L. 112-144)

22

Mammography

Mammography Quality Standards Act (MQSA), 1992
(P.L. 102-539)

20

Animal generic drug

Animal Generic Drug User Fee Act (AGDUFA), 2008
(P.L. 110-316)

10

Color certification

Color Additive Amendments of 1960
(P.L. 86-618)

9

Rare pediatric disease
priority review voucher

Prescription Drug User Fee Amendments of 2012
(P.L. 112-144)

8

Food reinspection

Food Safety Modernization Act (FSMA), 2011
(P.L. 111-353)

6

Voluntary qualified
importer (VQIP)

Food Safety Modernization Act (FSMA), 2011
(P.L. 111-353)

5

Export certification

FDA Export Reform and Enhancement Act of 1996 [for medical products]
(P.L. 104-134);
Food Safety Modernization Act (FSMA), 2011 [for foods]
(P.L. 111-353)

5

Food recall

Food Safety Modernization Act (FSMA), 2011
(P.L. 111-353)

1

Outsourcing facility

Drug Quality and Security Act (DQSA), 2013
(P.L. 113-54)

1

Third party auditor
program

Medical Device User Fee and Modernization Act (MDUFMA), 2002
(P.L. 107-250)

1

Tropical disease p

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Source: Frix Law Library, https://www.frixlaw.com/law-library/documents/crs%3AR44505. Public record. Not legal advice.
